Jatropha Genome Database

JcCB0106871.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0106871.30 + phase: 0 /partial
         (159 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038208001 assembled CDS                                        60   6e-10
GSVIVT01029816001 assembled CDS                                        47   3e-06

>GSVIVT01038208001 assembled CDS
          Length = 364

 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 4/131 (3%)

Query: 22  ITEHKLKGTNYLDWSKTIQIYLRSVEKDDHLIDDPP----TGDTRPRWLREDAKLFLLIR 77
           IT HKL G NYL WS++I +++R  EKDD++         T  T  +W+ E+  +   + 
Sbjct: 39  ITAHKLNGQNYLQWSQSILMFIRGKEKDDYITGASAAPETTASTYKKWIAENNMVMSWLV 98

Query: 78  NSIDSEVVGLINHCEFVKELMEYFEFLYSEKYNLSRMYKVCKGFYRADQQDKPLTAYFMD 137
           NS+ +++       +  KE+    +  +S+K N S + ++    +   Q +  +T YF  
Sbjct: 99  NSMTADIGENFLSFDTAKEIWNTAKETFSDKENTSEIIQIEGILHDLRQGNLMVTEYFNT 158

Query: 138 FKKIYEELNVL 148
             +++ +L+  
Sbjct: 159 LTRLWRQLDTF 169


>GSVIVT01029816001 assembled CDS
          Length = 1050

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 63/131 (48%), Gaps = 4/131 (3%)

Query: 21  KITEHKLKGTNYLDWSKTIQIYLRSVEKDDHLIDD----PPTGDTRPRWLREDAKLFLLI 76
           +IT HKL G N+L WS+++++++R   K  +LI       P       W  E++ +   +
Sbjct: 583 QITIHKLNGCNFLKWSQSVKLFIRVKGKLGYLIGANKAPKPEDHVYQTWDSENSMVMAWL 642

Query: 77  RNSIDSEVVGLINHCEFVKELMEYFEFLYSEKYNLSRMYKVCKGFYRADQQDKPLTAYFM 136
            NS+++ +          K+L +  +  YS+  N ++M+++        Q    +T Y+ 
Sbjct: 643 INSMETAIGQTYLFLPTAKDLWDEVQETYSDLGNATQMFEIKTKLKDIKQGSHSVTQYYN 702

Query: 137 DFKKIYEELNV 147
                ++EL++
Sbjct: 703 ILPNAWQELDL 713