Jatropha Genome Database

JcCB0106871.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0106871.20 - phase: 0 /partial
         (89 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01002028001 assembled CDS                                       163   1e-41
GSVIVT01002907001 assembled CDS                                       162   4e-41

>GSVIVT01002028001 assembled CDS
          Length = 439

 Score =  163 bits (413), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/89 (87%), Positives = 84/89 (94%)

Query: 1   HLDSQLVYPERPGELIAYYKIARHYKWALDQLFYKHNFSRVIILEDDMEIAPDFFNYFEA 60
           HLD++ V  ERPGELIAYYKIARHYKWALD+LFYK+NFSRVIILEDDMEIAPDFF+YFEA
Sbjct: 165 HLDNEPVKTERPGELIAYYKIARHYKWALDELFYKNNFSRVIILEDDMEIAPDFFDYFEA 224

Query: 61  AADLLDKDKSIMAVSSWNDNGQKQFVYDP 89
           AA LLD DKSIMAVSSWNDNGQKQFV+DP
Sbjct: 225 AAALLDNDKSIMAVSSWNDNGQKQFVHDP 253


>GSVIVT01002907001 assembled CDS
          Length = 95

 Score =  162 bits (409), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/89 (87%), Positives = 84/89 (94%)

Query: 1  HLDSQLVYPERPGELIAYYKIARHYKWALDQLFYKHNFSRVIILEDDMEIAPDFFNYFEA 60
          HLD++ V  ERPGELIAYYKIARHYKWALD+LFYK+NFSRVIILEDDMEIAPDFF+YFEA
Sbjct: 3  HLDNEPVKTERPGELIAYYKIARHYKWALDELFYKNNFSRVIILEDDMEIAPDFFDYFEA 62

Query: 61 AADLLDKDKSIMAVSSWNDNGQKQFVYDP 89
          AA LLD DKSIMAVSSWNDNGQKQFV+DP
Sbjct: 63 AAALLDNDKSIMAVSSWNDNGQKQFVHDP 91