Jatropha Genome Database

JcCB0106871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0106871.10 + phase: 0 /pseudo/partial
         (219 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025127001 assembled CDS                                       160   3e-40
GSVIVT01021828001 assembled CDS                                        70   8e-13

>GSVIVT01025127001 assembled CDS
          Length = 322

 Score =  160 bits (406), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 89/176 (50%), Positives = 113/176 (64%), Gaps = 22/176 (12%)

Query: 1   DELKKIAAYEVVDFVQSGIVLGLSADSTTKYVIDRIANLLEXXXXXXNSIGIPTSKKTHQ 60
           DELKKIAAY+ V++V+SG+VLGL   ST K+ +DRI  LL       N +GIPTSK TH+
Sbjct: 57  DELKKIAAYKAVEYVESGMVLGLGTGSTAKHAVDRIGELLRQGKLK-NIVGIPTSKMTHE 115

Query: 61  HALPLGIPLSDLDSHPNVDLDTENTDKVDSYLNLMKGRGGSLLREKMIE------ILLTS 114
            A+ LGIPLSDLDS+P +DL  +  D+VD YLNL+KGRGGSLLREKM+E      +++  
Sbjct: 116 QAVSLGIPLSDLDSYPILDLAIDGADEVDPYLNLVKGRGGSLLREKMVEGACKKFVVIVD 175

Query: 115 Q----NWFLILELIKPAETLPFCWKFTQERC--------LVAKLRRNGDSKNGEPL 158
           +    N+     L  P E +PFCWKFT +R          VAKLR     +NGEP 
Sbjct: 176 ESKLVNYLGGSGLAMPVEIVPFCWKFTAQRLQMLFEESGCVAKLRTY---QNGEPF 228


>GSVIVT01021828001 assembled CDS
          Length = 198

 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 1   DELKKIAAYEVVDFVQSGIVLGLSADSTTKYVIDRIANLLEXXXXXXNSIGIPTSKKTHQ 60
           D+LKK+AA + VD+V+SG+VLGL   ST  +V+ ++ +LL+      + +G+PTSK+T +
Sbjct: 82  DDLKKLAADKAVDYVKSGMVLGLGTGSTAAFVVAKLGHLLK-TGQLSDIVGVPTSKRTEE 140

Query: 61  HALPLGIPLSD 71
            AL LGIPLS 
Sbjct: 141 QALSLGIPLSQ 151