Jatropha Genome Database

JcCB0105731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0105731.10 + phase: 0 /partial
         (113 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017663001 assembled CDS                                       177   8e-46
GSVIVT01017602001 assembled CDS                                       172   3e-44

>GSVIVT01017663001 assembled CDS
          Length = 212

 Score =  177 bits (449), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 82/97 (84%), Positives = 89/97 (91%)

Query: 1   KTIAEGRRISTAKACENPTCVEIGDCCSHLKVPFANEIDKAYPRDFMQVGRVRVLLKRED 60
           KTIAEGRR+ST+KACENPTCVEIGDCCSHLK+PFA EIDKAYPRDFMQ GRVRVLLK+ED
Sbjct: 100 KTIAEGRRLSTSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKED 159

Query: 61  GTLYNPAIPTRKQLMLHIAALVPRHPGRTKKQEPVFT 97
           GTLYNPAI +RK+LM H+A LVPRHPGR KKQEP  T
Sbjct: 160 GTLYNPAISSRKELMRHVAELVPRHPGRVKKQEPAST 196


>GSVIVT01017602001 assembled CDS
          Length = 169

 Score =  172 bits (436), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 80/97 (82%), Positives = 86/97 (88%)

Query: 1   KTIAEGRRISTAKACENPTCVEIGDCCSHLKVPFANEIDKAYPRDFMQVGRVRVLLKRED 60
           KTIAEGRR+ST+KACENPTC EIGDCCSHLK+PFA EIDKAYPRDFMQ GRVRVLLK+ED
Sbjct: 57  KTIAEGRRLSTSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKED 116

Query: 61  GTLYNPAIPTRKQLMLHIAALVPRHPGRTKKQEPVFT 97
           GTLYNPAI + K LM H+A LVPRHPGR KKQEP  T
Sbjct: 117 GTLYNPAISSHKDLMRHVAELVPRHPGRVKKQEPAST 153