Jatropha Genome Database

JcCB0104911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0104911.10 + phase: 0 /pseudo/partial
         (421 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017697001 assembled CDS                                       148   4e-36
GSVIVT01014322001 assembled CDS                                       111   7e-25
GSVIVT01016837001 assembled CDS                                        58   1e-08
GSVIVT01010161001 assembled CDS                                        55   9e-08
GSVIVT01016826001 assembled CDS                                        52   6e-07

>GSVIVT01017697001 assembled CDS
          Length = 487

 Score =  148 bits (374), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 137/440 (31%), Positives = 209/440 (47%), Gaps = 45/440 (10%)

Query: 1   EDCISQLPDEILASVLS*LTVKDAVKTRLLSRKWRHLYLSYLHASRSELNFD-------- 52
           ED + +LPD+IL++++S L +K+AV+T +LS++WR ++  +     SEL FD        
Sbjct: 15  EDWLVELPDDILSTIISLLPLKEAVRTGILSKRWRSIWTCH-----SELWFDAASVLGIG 69

Query: 53  -CKSAGLDYTKSHKCQQYTCAFVQWVNKFLN-QYKGPNISSFRVAFCLGPKFAYDIDRWI 110
            C ++          Q  +  FV+ V++F+  + +G  I+SF + F LG +F   ID+WI
Sbjct: 70  DCSTSMSGNQPELNSQMQSSKFVERVDQFMYYRSQGRKINSFSIHFPLGKEFMSHIDQWI 129

Query: 111 TFAVKLGVEQLKIICSCYGISYRKQHELYAFSFQHL----------SDASELKHLELNSC 160
           T AV  GVE + +  S Y     K+ +  + +FQ                 LKHL L SC
Sbjct: 130 TCAVMKGVENIDLDLSEYFSFNLKRDDTSSTAFQIYEFPCRLFSVPGGRCTLKHLRLASC 189

Query: 161 ILKQ-DFNGQLHSLKFIDLIFTPLDQSILLFILSMCCNLERLRLAWCLCPAVLSFCGPFL 219
            L     +  L SL  +DL    +    L  +LS C +LE L L  C     LSF    L
Sbjct: 190 HLSALPSSNTLTSLITVDLQRVNISDQQLQDLLSTCSHLEWLSLCVCNGLVNLSFSALNL 249

Query: 220 QLKMLTVSFCKGLEEIELSATNLTTLEVFGDRTNFNIVFSDVPNLQNVLCQKPCTSSFPD 279
           QLK L++  C  LE IE+ A +L T +  G   +F+  F +VP L     +    SS  +
Sbjct: 250 QLKFLSIKNCFRLETIEIHAADLVTFKYGGHLPSFS--FKNVPKLAKASLEFFIKSSRTE 307

Query: 280 DL---FKQFENAAPQLQSLKY----------IPSSIATFGNLKQLEFIFYSGNEPYNIWK 326
            +     +F    PQL++LK           +P +  TF N+KQ E   +  ++  ++  
Sbjct: 308 GVMYALTRFPQDLPQLETLKLLSVLTLKKLQLPENGPTFTNVKQFELTVFPFDDDDDLSW 367

Query: 327 IIPVLIACPLLQIFNLTIRLGIHLYDAVNIEERTMKEIQKYHYSRLKEVEIGGFQGTETQ 386
           I  +L A PLLQ   L +           I ER + E    H S L   +I GF G + +
Sbjct: 368 IGYILKAFPLLQKLELNLFSPSFTKQPKEI-ERFLPECPHRHLSIL---QINGFYGNQHE 423

Query: 387 LALALYFLKNAVELERMVIS 406
           + L  Y L N V LE +V++
Sbjct: 424 VDLLKYLLHNLVALELLVVA 443


>GSVIVT01014322001 assembled CDS
          Length = 402

 Score =  111 bits (277), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 174/385 (45%), Gaps = 43/385 (11%)

Query: 1   EDCISQLPDEILASVLS*LTVKDAVKTRLLSRKWRHLYLSYLHASRSELNFDCKSAGLDY 60
           ED +S+LPDEIL S+LS LT+++A  T +LS++WR     YL    S LNFD     +  
Sbjct: 21  EDLLSELPDEILISILSRLTLREAAATSVLSQRWR-----YLWTYTSRLNFDSVVNKI-V 74

Query: 61  TKSHKCQQYTCA--------FVQWVNKFLNQYKGP-NISSFRVAFCLGPKFAYDIDRWIT 111
            +SH     T A        +++WV+K L +Y+G  N+  FRV F L  +   DID+W  
Sbjct: 75  RRSHSFALSTAAGRRRRRRKYIKWVHKVLAKYRGGRNLDEFRVCFDLSKRSRSDIDKWFE 134

Query: 112 FAVKLGVEQLK---IICSCYGISYRKQHELYAFSFQHLSDASELKHLELNSCILKQDFNG 168
           FA+   V+ L+   + CS    S  +  + +     +  +  +  H  L      +D NG
Sbjct: 135 FAMSKNVKNLEFDFLRCS----SQNQDRDPWFVMLSYFQNFYKFPHRIL-GVREARDPNG 189

Query: 169 Q---LHSLKFIDLIFTPLDQSILLFILSMCCNLERLRLAWCLCPAVLSFCGPFLQLKMLT 225
                 SLK + L    +    + + LS C  LERL +        L   GP + L+ L 
Sbjct: 190 MFVGFKSLKTLSLKSINVSSEAVEYFLSNCPLLERLSVHGSESLVNLRVAGPSIMLRHLE 249

Query: 226 VSFCKGLEEIELSATNLTTLEVFGDRTN----FNIVFSDVPNLQNVLCQKPCTSSFPDDL 281
           +  C  ++ IE+  TNL +    G+R       N+   + P L  VL        F  ++
Sbjct: 250 IVKCSSIQTIEICDTNLVSFTYRGERKGDLLPNNMHIENSPLLVEVLA-GVGRLGFAKNM 308

Query: 282 FKQFENAAPQLQSLK-----YIPSS-----IATFGNLKQLEFIFYSGNEPYNIWKIIPVL 331
             +  +   QLQ L+     + P       +    NLKQL+   + G     +   + +L
Sbjct: 309 LLKLSSCVHQLQILQLTVDHFFPERSRAYLLPKLRNLKQLKLTVFVGCPENCLLGFVAML 368

Query: 332 IACPLLQIFNLTIRLGIHLYDAVNI 356
             CP L+  +L +++ + L D++ +
Sbjct: 369 KKCPHLE--SLVLQVDVLLSDSIKM 391


>GSVIVT01016837001 assembled CDS
          Length = 521

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 135/319 (42%), Gaps = 23/319 (7%)

Query: 1   EDCISQLPDEILASVLS*LTVKDAVKTRLLSRKWRHLYLSYLHASRSELNFDCKSAGLDY 60
           +D IS LPD+IL  +L  L  KD  ++ LLS+ WR L      +      F C     D+
Sbjct: 5   QDRISHLPDDILIRILGLLPTKDVARSSLLSQAWRKLSPFSSLSLLM---FQCP----DF 57

Query: 61  TKSHKCQQYTCAFVQWVNKFLN-QYKGPNISSFRVAFCLGPKFAYD-IDRWITFAVKLGV 118
            +S +      +F+  ++  L  + K  N++  R+   L    +   ID WI  A++  V
Sbjct: 58  LESCRKNTDVSSFINAIDSSLRLRPKDVNLARLRLHLDLDDIESESLIDSWIDAALERKV 117

Query: 119 EQLKIICSCYGISYRKQHELYAFSFQHLSDASELKHLELNSCILKQDFNGQLHSLKFIDL 178
           ++L +      I+  K + L A  F      + +  L L  C L+   +  L +L+ + L
Sbjct: 118 KELDLYLRPRSIA--KPYGLPAKIFS----TTTITVLSLEQCRLEICGDIDLPALRKLCL 171

Query: 179 IFTPLDQSILLFILSMCCNLERLRLAWCLCPAVLSFCGPFLQLKMLTVSFCKGLEEIELS 238
                D+  +  ++S C  +E L +A C     L   G    L  L V  C  L  IE+ 
Sbjct: 172 RQIRCDEQAIRQLISSCPLIEDLDIASCGGLQKLHVSG-LANLHRLEVICCYNLRRIEID 230

Query: 239 ATNLTTLEVFGDRTNFNIVFSDVPNLQNVLCQKPCTSSFPDDLFKQFENAAPQLQSLKYI 298
           A +L  L     R   ++V +    L+ ++   P      +D  +  ++  P L+ L+  
Sbjct: 231 APSLQHLVYHCGRLPCDMVLTPCEFLRELILHDP---HITNDFLQNLDSGFPNLERLEID 287

Query: 299 PSSIA----TFGNLKQLEF 313
            + +     +   LK+LE 
Sbjct: 288 STRLQRIEISHHQLKRLEL 306


>GSVIVT01010161001 assembled CDS
          Length = 452

 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 117/266 (43%), Gaps = 44/266 (16%)

Query: 2   DCISQLPDEILASVLS*LTVKDAVKTRLLSRKWRHLYLSYLHASRSELNFDCKSAGLDYT 61
           D IS LP+ I+ ++L  L + DAV T +LS+KWR+ +L+  H     L  D     L   
Sbjct: 43  DIISDLPNNIIENILMRLPICDAVGTSILSKKWRYKWLTLPH-----LVID---NALGKK 94

Query: 62  KSHKCQQYTCAFVQWVNKFLNQYKGPNISSFRVAFCLGPKFAYDIDRWITFAVKLGVEQL 121
              + Q      V  V + L  +KGP I  F +       ++ DID WI F     +++ 
Sbjct: 95  LLGRQQSAKNELVSAVYQVLLLHKGP-IVKFVLEVDELESYS-DIDHWINFLSNHDIQEF 152

Query: 122 KIICSCYGISYRKQHELYAFSFQHLSDASELKHLELNSCILKQD--FNG--QLHSLKFID 177
            +       +   +   Y F+F H      L+HL+L  C  +    F G  +L SL+  D
Sbjct: 153 TL---SRAKTEHYKLPSYFFTFLH------LRHLKLRGCAFRPPPRFKGFSKLISLQLED 203

Query: 178 LIFTPLDQSILLFILSMCCNLERLRLAWCL--------CPAV--LSFCGPF--------L 219
           ++   +D      ++S C  LE+L ++  +         P +   SF G F        L
Sbjct: 204 IL---MDAETFGSLISSCPLLEQLTVSGYIPYDSLEISAPNLKSFSFTGDFGSICFKNTL 260

Query: 220 QLKMLTVSFCKGLEEIELSATNLTTL 245
            L  +TV+ C+  + ++  ++NL  +
Sbjct: 261 LLAEVTVALCRVNKNVKHQSSNLIKI 286


>GSVIVT01016826001 assembled CDS
          Length = 175

 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 19/148 (12%)

Query: 2   DCISQLPDEILASVLS*LTVKDAVKTRLLSRKWRHLY----LSYLHASRSE-LNFDCKSA 56
           D ISQLPD+IL S+LS L  +D  +T L+S+ WR L+    L  L    S+ L   CK  
Sbjct: 7   DQISQLPDDILRSILSLLPTRDLARTNLVSKAWRKLFAFSSLPILMFKSSDFLVAPCKDT 66

Query: 57  GLDYTKSHKCQQYTCAFVQWVNKFLN-QYKGPNISSFRVAFCLGPKFAYDIDRWITFAVK 115
            +             +F+  ++ +L  + K  ++   R+   L    +  ID WI  A++
Sbjct: 67  DV------------SSFINAIDSYLKLRQKDASLEKLRLHVHLNDVESL-IDSWINAALE 113

Query: 116 LGVEQLKIICSCYGISYRKQHELYAFSF 143
             V++L +     G + RK + L A  F
Sbjct: 114 RKVKELDLFILPRGRARRKPYSLPAKIF 141