Jatropha Genome Database

JcCB0104661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0104661.10 + phase: 0 
         (146 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027807001 assembled CDS                                       249   5e-67
GSVIVT01028324001 assembled CDS                                       242   4e-65
GSVIVT01024043001 assembled CDS                                       195   5e-51
GSVIVT01025525001 assembled CDS                                       191   1e-49
GSVIVT01016593001 assembled CDS                                       188   8e-49
GSVIVT01026879001 assembled CDS                                       185   8e-48
GSVIVT01025018001 assembled CDS                                       183   3e-47
GSVIVT01028963001 assembled CDS                                       176   3e-45

>GSVIVT01027807001 assembled CDS
          Length = 143

 Score =  249 bits (635), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 119/146 (81%), Positives = 127/146 (86%), Gaps = 3/146 (2%)

Query: 1   MSFRGLSRPNATSGMGVADHSINTFLELQRKKVHRYVVFRIDXXXXXXXXXXTGGPAESY 60
           MSFRG    NA+SGMGVADH   T+LELQRKKVHRYV+F+ID          TGGPAESY
Sbjct: 1   MSFRG---SNASSGMGVADHCKATYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESY 57

Query: 61  EDFAASLPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRE 120
           +DF ASLPENDCRYA+YDFDFVTSENCQKSKIFFIAWSPS SRIRAKMLYATSKDRFRRE
Sbjct: 58  DDFTASLPENDCRYAIYDFDFVTSENCQKSKIFFIAWSPSVSRIRAKMLYATSKDRFRRE 117

Query: 121 LDGIHYEIQATDPTEMDLEVIRERAN 146
           L+GIHYEIQATDPTEMDLEV+RERAN
Sbjct: 118 LEGIHYEIQATDPTEMDLEVLRERAN 143


>GSVIVT01028324001 assembled CDS
          Length = 166

 Score =  242 bits (618), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 112/137 (81%), Positives = 125/137 (91%)

Query: 10  NATSGMGVADHSINTFLELQRKKVHRYVVFRIDXXXXXXXXXXTGGPAESYEDFAASLPE 69
           NA+SGMGVADHS NTFLEL+RKKVHRYV+F+ID          TGGPAES+++FAA+LPE
Sbjct: 30  NASSGMGVADHSKNTFLELKRKKVHRYVIFKIDEKKKEVVVEKTGGPAESFDEFAAALPE 89

Query: 70  NDCRYAVYDFDFVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 129
           NDCRYAVYDFDFVTSENCQKSKIFFIAWSP +SRIRAKMLYATSK+RFRRELDG+HYEIQ
Sbjct: 90  NDCRYAVYDFDFVTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRELDGVHYEIQ 149

Query: 130 ATDPTEMDLEVIRERAN 146
           ATDPTEMDLEV+RERA+
Sbjct: 150 ATDPTEMDLEVLRERAH 166


>GSVIVT01024043001 assembled CDS
          Length = 143

 Score =  195 bits (496), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 87/136 (63%), Positives = 109/136 (80%)

Query: 11  ATSGMGVADHSINTFLELQRKKVHRYVVFRIDXXXXXXXXXXTGGPAESYEDFAASLPEN 70
           AT+GM V D   N+F+E++ KKVHRY+VF+ID           GGP E Y++ AASLP +
Sbjct: 8   ATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEGSKLVTVDKVGGPGEGYDELAASLPTD 67

Query: 71  DCRYAVYDFDFVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 130
           DCRYAV+DFDFVT++NC+KSKIFFIAWSP+ SRIRAKMLYATSK+  RR LDGIHY++QA
Sbjct: 68  DCRYAVFDFDFVTNDNCRKSKIFFIAWSPTASRIRAKMLYATSKEGLRRVLDGIHYDMQA 127

Query: 131 TDPTEMDLEVIRERAN 146
           TDPTEM ++VI++RA 
Sbjct: 128 TDPTEMGMDVIKDRAK 143


>GSVIVT01025525001 assembled CDS
          Length = 189

 Score =  191 bits (484), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 87/142 (61%), Positives = 106/142 (74%)

Query: 4   RGLSRPNATSGMGVADHSINTFLELQRKKVHRYVVFRIDXXXXXXXXXXTGGPAESYEDF 63
           R     NA SGM V D     FLEL+ K+ +R++VF+I+           G PA+SYEDF
Sbjct: 47  RTAKMANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPAQSYEDF 106

Query: 64  AASLPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDG 123
            ASLP ++CRYAVYDFDFVT ENCQKS+IFFIAW P +SR+R+KM+YA+SKDRF+RELDG
Sbjct: 107 TASLPADECRYAVYDFDFVTEENCQKSRIFFIAWCPDSSRVRSKMIYASSKDRFKRELDG 166

Query: 124 IHYEIQATDPTEMDLEVIRERA 145
           I  E+QATDPTEM L+VIR RA
Sbjct: 167 IQVELQATDPTEMGLDVIRSRA 188


>GSVIVT01016593001 assembled CDS
          Length = 202

 Score =  188 bits (478), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 87/136 (63%), Positives = 105/136 (77%)

Query: 10  NATSGMGVADHSINTFLELQRKKVHRYVVFRIDXXXXXXXXXXTGGPAESYEDFAASLPE 69
           NA SGM V D     FLEL+ K+ +R +VF+I+           G P +SYEDFAASLP 
Sbjct: 66  NAASGMAVHDDCKLKFLELKAKRTYRSIVFQIEEKQKQVIVEKVGEPTQSYEDFAASLPA 125

Query: 70  NDCRYAVYDFDFVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 129
           ++CRYAVYDFDFVT ENCQKS+IFFIAWSP TSR+R+KM+YA+SKDRF+RELDGI  E+Q
Sbjct: 126 DECRYAVYDFDFVTEENCQKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQ 185

Query: 130 ATDPTEMDLEVIRERA 145
           ATDPTE+ L+VIR RA
Sbjct: 186 ATDPTEIGLDVIRSRA 201


>GSVIVT01026879001 assembled CDS
          Length = 256

 Score =  185 bits (469), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 84/141 (59%), Positives = 105/141 (74%)

Query: 5   GLSRPNATSGMGVADHSINTFLELQRKKVHRYVVFRIDXXXXXXXXXXTGGPAESYEDFA 64
           G +  N+ SGM V D     FLEL+ K+ HR++VF+ID           G P E+YEDF 
Sbjct: 115 GHNMANSASGMAVHDECKLKFLELKAKRNHRFIVFKIDERIQQVMVEKLGSPDETYEDFT 174

Query: 65  ASLPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGI 124
            SLP ++CRYAV+DFDF T ENCQKSKIFFIAWSP TSR+R+KMLYA+SKDRF+RELDGI
Sbjct: 175 NSLPADECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGI 234

Query: 125 HYEIQATDPTEMDLEVIRERA 145
             E+QATDP+EM +++I+ RA
Sbjct: 235 QVELQATDPSEMSMDIIKGRA 255


>GSVIVT01025018001 assembled CDS
          Length = 132

 Score =  183 bits (464), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 83/132 (62%), Positives = 102/132 (77%)

Query: 15  MGVADHSINTFLELQRKKVHRYVVFRIDXXXXXXXXXXTGGPAESYEDFAASLPENDCRY 74
           M V D     FLEL+ K+ +R++V++I+           G P +SYEDF ASLP ++CRY
Sbjct: 1   MAVHDDCKLKFLELKAKRTYRFIVYKIEEKQKQVVVEKVGEPTQSYEDFTASLPADECRY 60

Query: 75  AVYDFDFVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPT 134
           AVYDFDFVT ENCQKSKIFFIAWSP TSR+R+KM+YA+SKDRF+RELDGI  E+QATDPT
Sbjct: 61  AVYDFDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPT 120

Query: 135 EMDLEVIRERAN 146
           EM L+VIR RA+
Sbjct: 121 EMGLDVIRSRAS 132


>GSVIVT01028963001 assembled CDS
          Length = 132

 Score =  176 bits (447), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 78/131 (59%), Positives = 99/131 (75%)

Query: 15  MGVADHSINTFLELQRKKVHRYVVFRIDXXXXXXXXXXTGGPAESYEDFAASLPENDCRY 74
           M V D     FLEL+ K+ HR++VF+I+           G P ESY+ F +SLP N+CRY
Sbjct: 1   MAVNDECKLKFLELKAKRNHRFIVFKIEEKIQQVVVEKLGSPDESYDAFTSSLPANECRY 60

Query: 75  AVYDFDFVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPT 134
           AV+DFDF T ENCQKSKIFFIAW+P TSR+R+KMLYA+SKDRF+RELDGI  E+QATDP+
Sbjct: 61  AVFDFDFTTDENCQKSKIFFIAWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPS 120

Query: 135 EMDLEVIRERA 145
           EM L++++ RA
Sbjct: 121 EMSLDIVKSRA 131