Jatropha Genome Database

JcCB0104641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0104641.10 - phase: 1 /partial
         (112 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008461001 assembled CDS                                       174   6e-45
GSVIVT01021668001 assembled CDS                                        56   3e-09
GSVIVT01016871001 assembled CDS                                        49   3e-07
GSVIVT01022917001 assembled CDS                                        49   4e-07
GSVIVT01004121001 assembled CDS                                        45   7e-06

>GSVIVT01008461001 assembled CDS
          Length = 1509

 Score =  174 bits (442), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 87/107 (81%), Positives = 95/107 (88%)

Query: 1   EGKNLKLVDAPVSGGVKRASDGTLTIMASGDDEALIHTGAVLAALSEKLYVIKGGCGAGS 60
           E KNLKLVDAPVSGGVKRAS GTLTI+ASG DEAL   G+VL+ALSEKLY+I+GGCG+GS
Sbjct: 567 ENKNLKLVDAPVSGGVKRASMGTLTIIASGTDEALTSAGSVLSALSEKLYIIRGGCGSGS 626

Query: 61  GVKMVNQLLAGVHIASAAEAMAFGARLGLNTRILFDFIVNSEGTSWF 107
            VKMVNQLLAGVHIA++AEAMA GARLGLNTR LFDFI NS GTSW 
Sbjct: 627 AVKMVNQLLAGVHIAASAEAMAIGARLGLNTRKLFDFITNSGGTSWM 673



 Score = 90.1 bits (222), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 70/106 (66%)

Query: 1   EGKNLKLVDAPVSGGVKRASDGTLTIMASGDDEALIHTGAVLAALSEKLYVIKGGCGAGS 60
           +G+   LVD  VS G+  + +G + I +SG  +A+     +L+A+ EKLY+ +G  GAGS
Sbjct: 248 DGEAAFLVDIYVSKGMSDSLNGKVMITSSGRSDAIARAQPILSAMCEKLYIFEGEVGAGS 307

Query: 61  GVKMVNQLLAGVHIASAAEAMAFGARLGLNTRILFDFIVNSEGTSW 106
            +KMVN LL G+H+ ++AEA+A G + G++  I++D I N+ G SW
Sbjct: 308 KIKMVNGLLEGIHLVASAEAIALGVQAGIHPWIIYDIIANAAGNSW 353


>GSVIVT01021668001 assembled CDS
          Length = 345

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 1/100 (1%)

Query: 7   LVDAPVSGGVKRASDGTLTIMASGDDEALIHTGAVLAALSEKLYVIKGGCGAGSGVKMVN 66
           ++DAPVSGGV  A  GTLT M  G +EA +   ++  ++  K  +  GG G GS  K+ N
Sbjct: 162 ILDAPVSGGVLAAETGTLTFMVGGSEEAYLAAKSLFLSMG-KNTIYCGGAGNGSAAKICN 220

Query: 67  QLLAGVHIASAAEAMAFGARLGLNTRILFDFIVNSEGTSW 106
            L   V +   +EA A G  LG+    L     +S    W
Sbjct: 221 NLAMAVSMLGVSEAFALGQSLGIAAGTLAKIFNSSSARCW 260


>GSVIVT01016871001 assembled CDS
          Length = 343

 Score = 49.3 bits (116), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 7   LVDAPVSGGVKRASDGTLTIMASGDDEALIHTGAVLAALSEKLYVIKGGCGAGSGVKMVN 66
            ++APVSG  K A DG L I  +G D++L  T A L  +  K     G  G G+ +K+V 
Sbjct: 164 FLEAPVSGSKKPAEDGQL-IFLTGGDKSLYETVAPLLDIMGKSRFFLGSVGNGAAMKLVV 222

Query: 67  QLLAGVHIASAAEAMAFGARLGLNTRILFDFI 98
            ++ G  +AS +E +  G ++GL+  ++ + I
Sbjct: 223 NMVMGSMMASFSEGLLLGEKVGLDPDVIVEVI 254


>GSVIVT01022917001 assembled CDS
          Length = 275

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 3   KNLKLVDAPVSGGVKRASDGTLTIMASGDDEALIHTGAVLAALSEKLYVIKGGCGAGSGV 62
           KN   VD+PVSGG   A DG L I+A GD   +     +   + +  YV   GCG     
Sbjct: 124 KNCWSVDSPVSGGDIGARDGKLAILAGGDSGVVEWLTPLYNVMGKGTYVGAPGCGM--SC 181

Query: 63  KMVNQLLAGVHIASAAEAMAFGARLGLNTRILFDFI 98
           K+ NQ++   ++   +E + F  R GL+ +   D +
Sbjct: 182 KIANQMIVAANMLGLSEGLVFAERAGLDKQQWMDAV 217


>GSVIVT01004121001 assembled CDS
          Length = 291

 Score = 45.1 bits (105), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 7   LVDAPVSGGVKRASDGTLTIMASGDDEALIHTGAVLAALSEKLYVIKGGCGAGSGVKMVN 66
            ++APVSG  K A DG L I+A+G+             + +K + + G  G G+ +K+V 
Sbjct: 115 FLEAPVSGSKKPAEDGQLVILAAGEKALYDEAIPAFDIMGKKSFFL-GQVGNGAKMKLVV 173

Query: 67  QLLAGVHIASAAEAMAFGARLGLNTRILFDFI 98
            ++ G  + + +E +    R GLN   L D +
Sbjct: 174 NMIMGSMMNAFSEGLVLADRSGLNPHTLLDVL 205