Jatropha Genome Database

JcCB0104191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0104191.10 + phase: 0 /partial
         (176 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035010001 assembled CDS                                       278   1e-75

>GSVIVT01035010001 assembled CDS
          Length = 204

 Score =  278 bits (710), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 129/173 (74%), Positives = 146/173 (84%)

Query: 1   QDYIFVREFVPFVASVLLKACKNSEDGNDMEVILGGLASLNDEIAWFKSEASKWDVSLSN 60
           QDYIFVR FVPF ASVLLKACK S++ +DMEVILGG+ASLNDEIAWFK EASKW + LS 
Sbjct: 31  QDYIFVRAFVPFSASVLLKACKESDNSSDMEVILGGMASLNDEIAWFKKEASKWGLELST 90

Query: 61  TVVHKANQTYCRFLESLMSREVEYALALTALWAIEATYQESFAHCLEDGSKTPPELQETC 120
            V  K NQ YCRFLESLMS +VEY +A+TA WAIEA YQE FA CL+DGSKTPPEL+ETC
Sbjct: 91  IVPQKVNQEYCRFLESLMSPQVEYTVAITAFWAIEAVYQEGFALCLQDGSKTPPELKETC 150

Query: 121 RRWGNEGFGEYCRSLKKIANRYLEKASADVIAKAEVTLLHVLEHEVEFWNMSH 173
           +RWGN+GFG+YCRSL+ IANR+L KA  DV+A+AEV LL VLE EVEFWNMS 
Sbjct: 151 QRWGNDGFGQYCRSLQNIANRHLGKAPPDVVARAEVALLQVLELEVEFWNMSQ 203