Jatropha Genome Database

JcCB0103991.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0103991.20 - phase: 1 /partial
         (96 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036252001 assembled CDS                                        92   4e-20
GSVIVT01000763001 assembled CDS                                        89   3e-19
GSVIVT01030780001 assembled CDS                                        55   5e-09
GSVIVT01011703001 assembled CDS                                        54   1e-08
GSVIVT01008097001 assembled CDS                                        46   4e-06

>GSVIVT01036252001 assembled CDS
          Length = 604

 Score = 92.0 bits (227), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 61/78 (78%)

Query: 19  SGQSFALPTGEIDLDSLANEVSDLNERLKALEADRIFLEHSMNSIRGGQEGVQFVQEIAF 78
           SGQS ++   E DL +L NE+S LN+RL++LEADR FLEHS+NS+R G EG+QF+Q+IA 
Sbjct: 527 SGQSSSIFCRENDLIALGNEISHLNDRLESLEADRDFLEHSVNSLRNGDEGLQFIQQIAS 586

Query: 79  HLKELRRIGIRKEEQKTS 96
            L+ELR+IGIR+  Q  S
Sbjct: 587 DLQELRKIGIRRRNQTVS 604


>GSVIVT01000763001 assembled CDS
          Length = 754

 Score = 89.4 bits (220), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 62/85 (72%)

Query: 6   SELTGDENNEIFYSGQSFALPTGEIDLDSLANEVSDLNERLKALEADRIFLEHSMNSIRG 65
           S    +ENN+   +G+  +    +++L +L NEVSDLN+RLK LEAD  FLEH+ NS+R 
Sbjct: 647 SHFACEENNDFDSNGKECSTHHNDVELFALRNEVSDLNDRLKTLEADYHFLEHTFNSMRN 706

Query: 66  GQEGVQFVQEIAFHLKELRRIGIRK 90
           G EG++FVQE+A  L+E+++IGIRK
Sbjct: 707 GSEGLEFVQEVARQLREIQKIGIRK 731


>GSVIVT01030780001 assembled CDS
          Length = 630

 Score = 55.5 bits (132), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 41/56 (73%)

Query: 34  SLANEVSDLNERLKALEADRIFLEHSMNSIRGGQEGVQFVQEIAFHLKELRRIGIR 89
           ++  EV  + ERL+ALEADR F++H ++S++ G +G+  +QEI  HL++LR + +R
Sbjct: 565 AIEEEVDHVYERLQALEADREFMKHCISSLKKGDKGMDLLQEILQHLRDLRTVEVR 620


>GSVIVT01011703001 assembled CDS
          Length = 908

 Score = 53.9 bits (128), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 39/52 (75%)

Query: 33  DSLANEVSDLNERLKALEADRIFLEHSMNSIRGGQEGVQFVQEIAFHLKELR 84
           +++  EV +L ERL+ALEADR FL+H ++S+  G +G+  +QEI  HL++LR
Sbjct: 830 NAIEEEVDNLYERLQALEADREFLKHCISSLNKGDKGMDLLQEILQHLRDLR 881


>GSVIVT01008097001 assembled CDS
          Length = 600

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%)

Query: 27  TGEIDLDSLANEVSDLNERLKALEADRIFLEHSMNSIRGGQEGVQFVQEIAFHLKELR 84
           TG+   D ++ EV  L+E+LKALE D  FL H+  ++  G EG   + +IA HL +L+
Sbjct: 531 TGDACNDIISREVPHLHEKLKALEEDGGFLNHAARALEKGSEGRNILTQIAHHLHKLQ 588