Jatropha Genome Database

JcCB0103441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0103441.10 - phase: 0 
         (274 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004399001 assembled CDS                                       355   1e-98
GSVIVT01007444001 assembled CDS                                       351   2e-97
GSVIVT01007168001 assembled CDS                                       291   3e-79
GSVIVT01004400001 assembled CDS                                       181   4e-46
GSVIVT01007167001 assembled CDS                                       167   6e-42
GSVIVT01025554001 assembled CDS                                        87   6e-18
GSVIVT01007445001 assembled CDS                                        67   9e-12

>GSVIVT01004399001 assembled CDS
          Length = 256

 Score =  355 bits (911), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 181/276 (65%), Positives = 212/276 (76%), Gaps = 22/276 (7%)

Query: 1   MAIVAVISTKPLRALSPSSFPFLKTPKFPSQYPSHPTVYSPKSTNASTLTTAFNTTKSRL 60
           MA+++   T  L+ L P +  F  + + PSQ+P    V     T  S  +         L
Sbjct: 1   MAVISCAQT--LQFLQPRNLSFPPSSRLPSQFPRVCHV----KTRVSFKSRKTTDITPNL 54

Query: 61  VLRASAS--DFGSYIGESLGDVTIFTAAGEPVMIKDLWDQNEGIAVVALLRHFGCPCCWE 118
           ++RAS+S  DF S IGE L +V+IFTA+GEPV+ KDLWDQ EG+AVVALLRHFGCPCCW+
Sbjct: 55  LVRASSSSSDFTSTIGEILREVSIFTASGEPVLFKDLWDQEEGMAVVALLRHFGCPCCWD 114

Query: 119 LASVLKESKSKFESAGVKLIAIGVGAPNKARILADRLPFPMDCLYADPDRKAYDVLGLYY 178
           LAS LKESK +F+SAGVKLIA+GVG P+KARILA+RLPFP+DCLYADPDRKAYDVLGLYY
Sbjct: 115 LASALKESKERFDSAGVKLIAVGVGTPDKARILAERLPFPLDCLYADPDRKAYDVLGLYY 174

Query: 179 GFGRTFFNPASVLICTWHATTCLEQAKVFSRFDALQKAVKNYTIEATPDDRSGVLQQGGM 238
           GFGRTFFNPAS              AKV  RF+ALQKAVKNYTI+ATPDD+S VLQQGGM
Sbjct: 175 GFGRTFFNPAS--------------AKVLLRFEALQKAVKNYTIKATPDDKSSVLQQGGM 220

Query: 239 FVFKGKQLLYARKDEGTGDHAPLDDVFNICCKVPIA 274
           FVFKGKQL+YARKDEGTGDHAPLDDVF++CCKVP+A
Sbjct: 221 FVFKGKQLVYARKDEGTGDHAPLDDVFDVCCKVPVA 256


>GSVIVT01007444001 assembled CDS
          Length = 255

 Score =  351 bits (901), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 177/274 (64%), Positives = 209/274 (76%), Gaps = 19/274 (6%)

Query: 1   MAIVAVISTKPLRALSPSSFPFLKTPKFPSQYPSHPTVYSPKSTNASTLTTAFNTTKSRL 60
           MA++A  S + L  L P S    ++ +FP ++P  P V   K++ +   T A N   S L
Sbjct: 1   MAVIA--SAQTLHVLQPRSVSSPQSGRFPPRFPRAPHV---KTSLSFKSTEAPNIRHSLL 55

Query: 61  VLRASASDFGSYIGESLGDVTIFTAAGEPVMIKDLWDQNEGIAVVALLRHFGCPCCWELA 120
           V  +S SDF   IGE LG+V++FTA+GE V+ KDLWDQ EG+AVVALLRHFGC CCWELA
Sbjct: 56  VRASSTSDFNPDIGEILGEVSVFTASGESVLFKDLWDQKEGVAVVALLRHFGCFCCWELA 115

Query: 121 SVLKESKSKFESAGVKLIAIGVGAPNKARILADRLPFPMDCLYADPDRKAYDVLGLYYGF 180
           S LKESK+ F+SAGVKLIA+GVG PNKA ILA+RLPFPMDCLYADPDRKAYDVLGLYYG 
Sbjct: 116 SALKESKATFDSAGVKLIAVGVGTPNKACILAERLPFPMDCLYADPDRKAYDVLGLYYGL 175

Query: 181 GRTFFNPASVLICTWHATTCLEQAKVFSRFDALQKAVKNYTIEATPDDRSGVLQQGGMFV 240
            RT F+PAS              AKVFSRF++LQKA+KNYT+E TPDD+SGVLQQGGMFV
Sbjct: 176 SRTLFSPAS--------------AKVFSRFESLQKALKNYTLEGTPDDKSGVLQQGGMFV 221

Query: 241 FKGKQLLYARKDEGTGDHAPLDDVFNICCKVPIA 274
           FKGKQLLYA KDEGTGDHAPLDD+F+ CC+VP+A
Sbjct: 222 FKGKQLLYAWKDEGTGDHAPLDDIFDACCRVPVA 255


>GSVIVT01007168001 assembled CDS
          Length = 159

 Score =  291 bits (744), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 138/173 (79%), Positives = 153/173 (88%), Gaps = 14/173 (8%)

Query: 102 IAVVALLRHFGCPCCWELASVLKESKSKFESAGVKLIAIGVGAPNKARILADRLPFPMDC 161
           +AVVALLRHFGCPCCW+LAS LKESK +F+SAGVKLIA+GVG P+KARILA+RLPFP+DC
Sbjct: 1   MAVVALLRHFGCPCCWDLASALKESKERFDSAGVKLIAVGVGTPDKARILAERLPFPLDC 60

Query: 162 LYADPDRKAYDVLGLYYGFGRTFFNPASVLICTWHATTCLEQAKVFSRFDALQKAVKNYT 221
           LYADPDRKAYDVLGLYYGFGRTFFNPAS              AKV  RF+ALQKAVKNYT
Sbjct: 61  LYADPDRKAYDVLGLYYGFGRTFFNPAS--------------AKVLLRFEALQKAVKNYT 106

Query: 222 IEATPDDRSGVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDVFNICCKVPIA 274
           I+ATPDD+S VLQQGGMFVFKGKQL+YARKDEGTGDHAPLDDVF++CCKVP+A
Sbjct: 107 IKATPDDKSSVLQQGGMFVFKGKQLVYARKDEGTGDHAPLDDVFDVCCKVPVA 159


>GSVIVT01004400001 assembled CDS
          Length = 102

 Score =  181 bits (458), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 86/116 (74%), Positives = 96/116 (82%), Gaps = 14/116 (12%)

Query: 159 MDCLYADPDRKAYDVLGLYYGFGRTFFNPASVLICTWHATTCLEQAKVFSRFDALQKAVK 218
           MDCLYADPDRKAYDVLGLYYG  RT F+PAS              AKVFSRF++LQKA+K
Sbjct: 1   MDCLYADPDRKAYDVLGLYYGLSRTLFSPAS--------------AKVFSRFESLQKALK 46

Query: 219 NYTIEATPDDRSGVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDVFNICCKVPIA 274
           NYT+E TPDD+SGVLQQGGMFVFKGKQLLYA KDEGTGDHAPLDD+F+ CC+VP+A
Sbjct: 47  NYTLEGTPDDKSGVLQQGGMFVFKGKQLLYAWKDEGTGDHAPLDDIFDACCRVPVA 102


>GSVIVT01007167001 assembled CDS
          Length = 170

 Score =  167 bits (422), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 90/166 (54%), Positives = 112/166 (67%), Gaps = 5/166 (3%)

Query: 1   MAIVAVISTKPLRALSPSSFPFLKTPKFPSQYPSHPTVYSPKSTNASTLTTAFNTTKSRL 60
           MA++A  S + L  L P S    ++ +FP ++P  P V +  S  +   T A N   S L
Sbjct: 1   MAVIA--SAQTLHVLQPRSVSSPQSRRFPPRFPRAPHVKTSLSLKS---TEAPNIRHSLL 55

Query: 61  VLRASASDFGSYIGESLGDVTIFTAAGEPVMIKDLWDQNEGIAVVALLRHFGCPCCWELA 120
           V  +S SDF   IGE LG+V++FTA+GE V+ KDLWDQ EG+AVVALLRHFGC CCWELA
Sbjct: 56  VRASSTSDFNPDIGEILGEVSVFTASGESVLFKDLWDQKEGVAVVALLRHFGCFCCWELA 115

Query: 121 SVLKESKSKFESAGVKLIAIGVGAPNKARILADRLPFPMDCLYADP 166
           S LKESK++F+SAGVKLIA+GVG PNKA ILA+RL     C    P
Sbjct: 116 SALKESKARFDSAGVKLIAVGVGTPNKACILAERLGSSCHCETPHP 161


>GSVIVT01025554001 assembled CDS
          Length = 254

 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 103/225 (45%), Gaps = 29/225 (12%)

Query: 56  TKSRLVLRASASDFGSYIGES---------LGDVTIFTAAGEPVMIKDLWDQNEGIAVVA 106
           + SR V+ ASA+     I  S         L    +F   G  + I DLW   +  AVVA
Sbjct: 47  SSSRRVITASAASGSPGIESSTVSDDTTNLLDRAQVFDLNGNGIPISDLWKDRK--AVVA 104

Query: 107 LLRHFGCPCCWELASVLKESKSKFESAGVKLIAIGVGAPNKARILADRLPFPMDCLYADP 166
             RHFGC  C + A +L   K + +++GV L+ IG G+ ++A+  +++  F  + +YADP
Sbjct: 105 FARHFGCVFCRKRADLLASQKDRMDASGVALVLIGPGSIDQAKAFSEQTNFKGE-VYADP 163

Query: 167 DRKAYDVLGLYYGFGRTFFNPASVLICTWHATTCLEQAKVFSRFDALQKAVKNYTIEATP 226
              +Y+VLG   G   TF   A + I   +     +   +  + D + +           
Sbjct: 164 SHSSYEVLGFVSGVLSTFTPQAGLKIIQLYMEGYRQDWGLSFQRDTVTR----------- 212

Query: 227 DDRSGVLQQGGMFVFK-GK-QLLYARKDEGTGDHAPLDDVFNICC 269
               G  QQGG+ V   GK  + Y  KD+  GD   ++D+   CC
Sbjct: 213 ----GGWQQGGIIVAGPGKSNISYIHKDKEAGDDPDMEDILTACC 253


>GSVIVT01007445001 assembled CDS
          Length = 121

 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 68/114 (59%), Gaps = 13/114 (11%)

Query: 4   VAVIS-TKPLRALSPSSFPFLKTPKFPSQYPS--H-PTVYSPKSTNASTLTTAFNTTKSR 59
           +AVIS  + L+ L P +  F  + + PSQ+P   H  T  S KS   + +T         
Sbjct: 14  MAVISCAQALQFLQPRNLSFPPSGRLPSQFPRVCHVKTRVSFKSRKTTDIT-------PN 66

Query: 60  LVLRASAS--DFGSYIGESLGDVTIFTAAGEPVMIKDLWDQNEGIAVVALLRHF 111
           L++RAS+S  DF S IGE LG+V+IFTA+GEPV+ KDLWDQ E   ++ L  H+
Sbjct: 67  LLVRASSSSSDFTSTIGEILGEVSIFTASGEPVLFKDLWDQEEVNFILMLDFHY 120