Jatropha Genome Database

JcCB0103411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0103411.10 + phase: 0 /partial
         (323 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033008001 assembled CDS                                       617   e-177
GSVIVT01008621001 assembled CDS                                       609   e-175
GSVIVT01000259001 assembled CDS                                       114   6e-26
GSVIVT01017497001 assembled CDS                                        90   2e-18

>GSVIVT01033008001 assembled CDS
          Length = 489

 Score =  617 bits (1592), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 289/323 (89%), Positives = 307/323 (95%)

Query: 1   MIAIPYLTALTTYFSYGLLFAFGQIRDFFRKIIDWWSSNNLQGYAPICLGLEDFYIRRLY 60
           MIA+PY+TALTTYFSYGLLF FGQIRD FRKI+DW+ SNNLQGYAPICLG EDFY RRLY
Sbjct: 1   MIAVPYVTALTTYFSYGLLFVFGQIRDLFRKILDWFRSNNLQGYAPICLGFEDFYKRRLY 60

Query: 61  LRIQDCFGRPIASAPDAWFDVVERYSNDNNKTLIRTSNVKRCLNLGSYNYLGFAAADEYC 120
           LRIQDCFGRPI+SAPDAW DV+ER SNDNNKTL RTSN+ RCLNLGSYNYLGFAA+DEYC
Sbjct: 61  LRIQDCFGRPISSAPDAWLDVIERNSNDNNKTLKRTSNISRCLNLGSYNYLGFAASDEYC 120

Query: 121 TPRVIESLKKYSPSTCSSRVDAGTTALHNELEKCVADFVGKPAAIVFGMGYVTNSAILPV 180
           TPRVIESLKK+SPSTCSSR D GT  +HNELEK VA+FVGKPAAIVFGMGYVTNSAILPV
Sbjct: 121 TPRVIESLKKFSPSTCSSRADGGTIMMHNELEKYVANFVGKPAAIVFGMGYVTNSAILPV 180

Query: 181 LIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIADGQPRTHRPWK 240
           LI KGGLIISDSLNH+SIVNGARGSGATIRVFQHNTPSHLEEVLREQIA+GQPRTHRPWK
Sbjct: 181 LISKGGLIISDSLNHSSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWK 240

Query: 241 KIIVIVEGIYSMEGELCKLPEIIAICKKYKAYTYLDEAHSIGAVGKSGRGVCELLGVDTA 300
           KIIV+VEGIYSMEG+LCKLPEIIAICKKYKAY+YLDEAHSIGAVGK+GRGVCELLGVD A
Sbjct: 241 KIIVVVEGIYSMEGDLCKLPEIIAICKKYKAYSYLDEAHSIGAVGKTGRGVCELLGVDPA 300

Query: 301 DVDIMMGTFTKSFGSCGGYIAGS 323
           DVDI+MGTFTKSFGSCGGYIAGS
Sbjct: 301 DVDILMGTFTKSFGSCGGYIAGS 323


>GSVIVT01008621001 assembled CDS
          Length = 513

 Score =  609 bits (1571), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 288/347 (82%), Positives = 309/347 (89%), Gaps = 24/347 (6%)

Query: 1   MIAIPYLTALTTYFSYGLLFAFGQIRDFFRKIIDWWSSNNLQGYAPICLGLEDFYIRRLY 60
           MI IPYLTALTT FSYGLLFAFGQ RDFFRKI DWW ++NLQGYAPICLGLEDFYIRRLY
Sbjct: 1   MITIPYLTALTTLFSYGLLFAFGQFRDFFRKIFDWWKASNLQGYAPICLGLEDFYIRRLY 60

Query: 61  LRIQDCFGRPIASAPDAWFDVVERYSNDNNKTLIRTSNVKRCLNLGSYNYLGFAAADEYC 120
           LRIQDCFGRPI+SAPDAWFDVVER+SNDNNKTL RT+ + +CLNLGSYNYLGFAA+DE+C
Sbjct: 61  LRIQDCFGRPISSAPDAWFDVVERFSNDNNKTLKRTTKISKCLNLGSYNYLGFAASDEFC 120

Query: 121 TPRVIESLKKYSPSTCSSRVDAGTTALHNELEKCVADFVGKPAAIVFGMGYVTNSAILPV 180
           TPRVIESLK++SP TCS+RVD GTT LH E+E+CVA+FVGKPAAIVFGMGYVTNSAILPV
Sbjct: 121 TPRVIESLKRFSPGTCSTRVDGGTTTLHKEVEECVANFVGKPAAIVFGMGYVTNSAILPV 180

Query: 181 LIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIADGQPRTHRPWK 240
           LIGKGGLIISDSLNHNSIVNGARGSGAT+RVFQHN PSHLE+VLREQIA+GQPRTHRPWK
Sbjct: 181 LIGKGGLIISDSLNHNSIVNGARGSGATVRVFQHNIPSHLEKVLREQIAEGQPRTHRPWK 240

Query: 241 KIIVIVEGIYSMEGELCKLPEIIAICKK------------------------YKAYTYLD 276
           KIIV+VEGIYSMEGELCKLPEI+AICKK                        YKAY YLD
Sbjct: 241 KIIVVVEGIYSMEGELCKLPEIVAICKKYKVCSSTQKNLQSSGACYRYASMTYKAYVYLD 300

Query: 277 EAHSIGAVGKSGRGVCELLGVDTADVDIMMGTFTKSFGSCGGYIAGS 323
           EAHSIGAVGK+GRGVCELLGVDTADVDIMMGTFTKSFGSCGGYIAGS
Sbjct: 301 EAHSIGAVGKTGRGVCELLGVDTADVDIMMGTFTKSFGSCGGYIAGS 347


>GSVIVT01000259001 assembled CDS
          Length = 483

 Score =  114 bits (285), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 114/229 (49%), Gaps = 10/229 (4%)

Query: 98  NVKRCLNLGSYNYLGFAAAD---EYCTPRVIESLKKYSPSTCSSRVDAGTTALHNELEKC 154
           N K  +N  S NYLG    +   E CT     +L+KY   +C  R   GT  +H + E  
Sbjct: 107 NGKEVVNFTSANYLGLIGHEKLLESCT----AALEKYGVGSCGPRGFYGTIDVHLDCEAR 162

Query: 155 VADFVGKPAAIVFGMGYVTNSAILPVLIGKGGLIISDSLNHNSIVNGARGSGATIRVFQH 214
           +A F+G P +I++  G  T  + +P    +G +I+ D   H  I NG   S +TI  F+H
Sbjct: 163 IAKFLGTPDSILYSYGLSTMFSAIPAFCKRGDIIVVDEGVHWGIQNGLYLSRSTIVYFKH 222

Query: 215 NTPSHLEEVLREQIADGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIIAICKKYKAYTY 274
           N    L+  L E+I     R  +  + I+V  E +Y   G++  L EII + +KY+    
Sbjct: 223 NDMESLQNTL-EKITLENKRAKKLRRYIVV--EAVYQNSGQIAPLDEIIRLKEKYRFRVL 279

Query: 275 LDEAHSIGAVGKSGRGVCELLGVDTADVDIMMGTFTKSFGSCGGYIAGS 323
           LDE++S G +G +GRG+ E   V    +DI+      +  + GG+  GS
Sbjct: 280 LDESNSFGVLGSTGRGLTEFFRVPIEKIDIITAAMGHALATEGGFCTGS 328


>GSVIVT01017497001 assembled CDS
          Length = 472

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 111/239 (46%), Gaps = 38/239 (15%)

Query: 103 LNLGSYNYLGFAAADEYCTPRVIESLKKYSPSTCSSRVDAGTTALHNELEKCVADFVGKP 162
           L L S+  +G AAA         ++ +++      S +  G T  H  LE C+AD   K 
Sbjct: 110 LGLSSHPTIGKAAA---------KAAQEHGMGPRGSALVCGYTNYHRLLESCLADLKKKE 160

Query: 163 AAIVFGMGYVTNSAILPVLIGKGGL--------------IISDSLNHNSIVNG----ARG 204
             ++   G+  N A++  L     L              I SD+LNH SI++G     R 
Sbjct: 161 DCLLCPTGFAANMALMVALGSVSSLLSADQKPLKDERVAIFSDALNHASIIDGIRLAERQ 220

Query: 205 SGATIRVFQHNTPSHLEEVLREQIADGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIIA 264
             A I V++H    HL E+L     +          K +V+ + ++SM+G+   + E+  
Sbjct: 221 GSAEIFVYRHCDMPHLNELLSSCTLE----------KKVVVTDSLFSMDGDFAPMAELAK 270

Query: 265 ICKKYKAYTYLDEAHSIGAVGKSGRGVCELLGVDTADVDIMMGTFTKSFGSCGGYIAGS 323
           + KK+     +D+AH     GK+G GV E    ++ DVDI +GT +K+ G  GG+IA S
Sbjct: 271 LRKKHGFLLVIDDAHGTFVCGKNGGGVAEEFNCES-DVDICVGTLSKAAGCHGGFIACS 328