Jatropha Genome Database

JcCB0103361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0103361.10 - phase: 0 
         (468 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028896001 assembled CDS                                       519   e-147
GSVIVT01019733001 assembled CDS                                       276   2e-74
GSVIVT01035710001 assembled CDS                                       268   6e-72

>GSVIVT01028896001 assembled CDS
          Length = 444

 Score =  519 bits (1336), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 279/468 (59%), Positives = 333/468 (71%), Gaps = 25/468 (5%)

Query: 1   MAATVKMILGSFAFAIFWVLAVFPAIPILPIGRTAGSLLAAVLMVIFQVITPTEAYSSID 60
           MA + K++LGS AFAIFWVLAVFPA+P LPIGRTAGSLL A+LMV F+VITP +AY +ID
Sbjct: 1   MAVSAKLVLGSIAFAIFWVLAVFPAVPFLPIGRTAGSLLGAMLMVSFRVITPDQAYDAID 60

Query: 61  ISILALLFGTMVVSVYLERADAFKYLGKLLSWKSLGAKDLIFRVCLVSAITSAFFTNDTS 120
           + IL LLFGTMVVS+YLERAD FKYLGKLLSWKSLGAKDL+ R+CL+SAI+S+ FTNDT+
Sbjct: 61  LPILGLLFGTMVVSIYLERADMFKYLGKLLSWKSLGAKDLLCRICLISAISSSLFTNDTT 120

Query: 121 CIVLTQMVLKIARQRNLPPHPFLLXXXXXXXXXXXXTPIGNPQNLIIALNGDISFWPFLG 180
           C+VLT+ VLKIARQ NLPPHPFLL            TPIGNPQNL+IAL   ISF  F+ 
Sbjct: 121 CVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIALESKISFGDFVL 180

Query: 181 GIFPAAVVXXXXXXXXXXCMYWKQLSSQKXXXXXXXXXXXXXXXXYHRLNCQEICLGLDM 240
           GI PA +V          CMYW+    +                     N   +  G   
Sbjct: 181 GILPAMLVGVLVNALILLCMYWRFSGDE---------------------NQNILSNGTAS 219

Query: 241 QSSPYVLENLAALSNGVLERSSAASKWKALIWKSCVYLVTIGMLIALLMGVNISWTALTA 300
              P      A     + E+ +  +KWK L+WK CVYLVTIGMLI+LLMG+N+SWTA+ A
Sbjct: 220 MDEP----GDAVFMQSLDEKENPTTKWKRLLWKPCVYLVTIGMLISLLMGLNMSWTAIAA 275

Query: 301 ALSLMVLDFKDAQPCLEKVSYSLLVFFCGLFMTITGFEKTGIPSYLWEFLEPYAHIDHAS 360
           AL+L+VLDFKDA+P LEKVSYSLL+FFCG+F+T+ GF KTGIPS +W+ +EPYA IDH S
Sbjct: 276 ALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSAVWDLMEPYAKIDHVS 335

Query: 361 GITVLAXXXXXXXXXXXXVTTVLLLGGRVAASAASISPTYVKKAWLVLAWVSTASGNFTL 420
           GI VLA            V TVLLLG RVAASAA IS    KKAWL+LAWVST +GN +L
Sbjct: 336 GIAVLAVVILVLSNVASNVPTVLLLGARVAASAAQISAAEEKKAWLILAWVSTVAGNLSL 395

Query: 421 VGSAANMIVCEQARNAPNFGCNLSFFGHLKFGLPSTILVTAIGLTLIH 468
           +GSAAN+IVCEQAR A + G  LSF+ HLKFG+P+T++VTAIGLTLI 
Sbjct: 396 LGSAANLIVCEQARRAQHLGYTLSFWRHLKFGVPATLVVTAIGLTLIR 443


>GSVIVT01019733001 assembled CDS
          Length = 780

 Score =  276 bits (706), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 141/222 (63%), Positives = 168/222 (75%), Gaps = 2/222 (0%)

Query: 249 NLAALSNG--VLERSSAASKWKALIWKSCVYLVTIGMLIALLMGVNISWTALTAALSLMV 306
           NL    NG  + E  S+A  WK L+WK+CVYLVTIGMLIALL+G+N+SWTALTAAL+L+V
Sbjct: 558 NLQGTLNGGPLEENESSAKPWKRLLWKTCVYLVTIGMLIALLVGLNMSWTALTAALALVV 617

Query: 307 LDFKDAQPCLEKVSYSLLVFFCGLFMTITGFEKTGIPSYLWEFLEPYAHIDHASGITVLA 366
           LDFKDAQPCL+KVSYS+L+FFCG+F+T+ GF +TGIPS LW   EPYA I+H  GI VL 
Sbjct: 618 LDFKDAQPCLQKVSYSILIFFCGMFITVDGFNRTGIPSTLWNLTEPYARINHVGGIVVLT 677

Query: 367 XXXXXXXXXXXXVTTVLLLGGRVAASAASISPTYVKKAWLVLAWVSTASGNFTLVGSAAN 426
                       V TVLLLG RVAASA   S    K+AWL+LAWVST +GN +L+GSAAN
Sbjct: 678 LVILVLSNVASNVPTVLLLGARVAASATMTSQGQEKRAWLILAWVSTVAGNLSLLGSAAN 737

Query: 427 MIVCEQARNAPNFGCNLSFFGHLKFGLPSTILVTAIGLTLIH 468
           +IVCEQAR A  FG  LSF+ HLKFG+PST++VTAIGL LI 
Sbjct: 738 LIVCEQARRARFFGYTLSFWSHLKFGVPSTLIVTAIGLLLIR 779



 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 68/87 (78%), Positives = 79/87 (90%)

Query: 1   MAATVKMILGSFAFAIFWVLAVFPAIPILPIGRTAGSLLAAVLMVIFQVITPTEAYSSID 60
           +A T K++LGS AFAIFWVLAVFPA+P LPIGRTAGSLL A+LMVIF+VITP +AY++ID
Sbjct: 393 LAPTEKVVLGSIAFAIFWVLAVFPAVPFLPIGRTAGSLLGAILMVIFRVITPDQAYAAID 452

Query: 61  ISILALLFGTMVVSVYLERADAFKYLG 87
           +SIL LLFGTMVVSVYLE+AD FKYLG
Sbjct: 453 LSILGLLFGTMVVSVYLEQADMFKYLG 479


>GSVIVT01035710001 assembled CDS
          Length = 359

 Score =  268 bits (684), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 150/303 (49%), Positives = 185/303 (61%), Gaps = 46/303 (15%)

Query: 166 IIALNGDISFWPFLGGIFPAAVVXXXXXXXXXXCMYWKQLSSQKXXXXXXXXXXXXXXXX 225
           I++L   +SF  FL G+ PA +V          CMYW+ L                    
Sbjct: 102 IMSLPSSLSFGEFLLGLLPAMLVGVFVNALILLCMYWRLL-------------------- 141

Query: 226 YHRLNCQEICLGLDMQSSPYVLENLAALSNGVLERSSAASKWKALIWKSCVYLVTIGMLI 285
                                  NL    +G +E   +A  WK  +WK+ VYLVTIGMLI
Sbjct: 142 -----------------------NLQGTLSGNIE---SAKPWKRQLWKTRVYLVTIGMLI 175

Query: 286 ALLMGVNISWTALTAALSLMVLDFKDAQPCLEKVSYSLLVFFCGLFMTITGFEKTGIPSY 345
           ALL+G+N+SWT LT AL+L+VLDFKDAQPCL+KVSYSLL+FFCG+F+T+ GF  TGIPS 
Sbjct: 176 ALLVGLNMSWTTLTTALALVVLDFKDAQPCLQKVSYSLLIFFCGMFITVDGFNSTGIPST 235

Query: 346 LWEFLEPYAHIDHASGITVLAXXXXXXXXXXXXVTTVLLLGGRVAASAASISPTYVKKAW 405
           LW   EPYA I+H  GI VL             V TV+LLG RVAASAA IS    K+AW
Sbjct: 236 LWNLTEPYARINHVGGIVVLTLVILVLSNVASNVPTVILLGARVAASAAMISKGQEKRAW 295

Query: 406 LVLAWVSTASGNFTLVGSAANMIVCEQARNAPNFGCNLSFFGHLKFGLPSTILVTAIGLT 465
           L+LAWVST +GN +L+GSAAN+IVCEQAR +  +G  LSF+ HLKFG+PST++VTAIGL 
Sbjct: 296 LILAWVSTVAGNLSLMGSAANLIVCEQARRSRFYGYTLSFWSHLKFGVPSTLIVTAIGLL 355

Query: 466 LIH 468
           LI 
Sbjct: 356 LIR 358



 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/87 (79%), Positives = 78/87 (89%)

Query: 1  MAATVKMILGSFAFAIFWVLAVFPAIPILPIGRTAGSLLAAVLMVIFQVITPTEAYSSID 60
          +A T K++LGS AFAIFWVLAVFPA+P LPIGRTAGSLL A+LMVIF+VITP EAY +ID
Sbjct: 12 LAPTEKVVLGSIAFAIFWVLAVFPAVPFLPIGRTAGSLLGAMLMVIFRVITPDEAYDAID 71

Query: 61 ISILALLFGTMVVSVYLERADAFKYLG 87
          +SIL LLFGTMVVSVYLE+AD FKYLG
Sbjct: 72 LSILGLLFGTMVVSVYLEQADMFKYLG 98