Jatropha Genome Database

JcCB0102421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0102421.10 - phase: 0 /partial
         (162 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026821001 assembled CDS                                       239   4e-64

>GSVIVT01026821001 assembled CDS
          Length = 318

 Score =  239 bits (610), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 115/159 (72%), Positives = 129/159 (81%), Gaps = 2/159 (1%)

Query: 4   KNRVLVIGGTGYLGQHLLQGLSEIKERPFDIAFTYHXXXXXXXXXXXXXXHSRSFRVDIK 63
           K RVLV+GGTGYLGQHLLQG SEI+  PFD+AFT+H              HSR+F V+++
Sbjct: 3   KKRVLVVGGTGYLGQHLLQGFSEIQGHPFDLAFTHHSTPPQPLVHAIP--HSRAFHVNLQ 60

Query: 64  TGEGFQTISYEFGQPDVVVNCAAISVPRACEMDPTAAMSINVPCSLVNWLSSFELNKTLL 123
           +GEGF+ IS  FGQP VVVNCAAISVPR+CEMDP AAMSINVP SLV WL SFE + TLL
Sbjct: 61  SGEGFEAISRSFGQPHVVVNCAAISVPRSCEMDPAAAMSINVPSSLVKWLLSFEESNTLL 120

Query: 124 IHLSTDQVYEGMKSFYKEEDENVPVNVYGKSKLAAEQFI 162
           IHLSTDQVYEG+KSFYKEEDE VPVNVYGKSK+AAEQFI
Sbjct: 121 IHLSTDQVYEGVKSFYKEEDETVPVNVYGKSKVAAEQFI 159