Jatropha Genome Database

JcCB0102141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0102141.10 - phase: 0 /partial
         (158 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037231001 assembled CDS                                        93   5e-20
GSVIVT01025574001 assembled CDS                                        48   2e-06

>GSVIVT01037231001 assembled CDS
          Length = 1805

 Score = 93.2 bits (230), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 63/162 (38%), Positives = 86/162 (53%), Gaps = 16/162 (9%)

Query: 1   MEFIGRIVDKEFKGYGVYSGVVQSYDPSSGFFEIVYEDGDSEELDFSEVVSLLERKEAVP 60
           MEF+GR V KEF G+G++SG+V+SYDP SGFFEI+YEDGDSEEL++SE+  LLE + A P
Sbjct: 1   MEFVGRPVKKEFHGFGIFSGLVKSYDPESGFFEILYEDGDSEELEWSELAFLLEGEVADP 60

Query: 61  --VDXXXX-XXXXXXXXXXXXXXXXXNQGQSGNSISRSQPI----EETLGRPSVVEANVN 113
             V+                      N   SGN+      +     ETLG+    E    
Sbjct: 61  GLVELTQKPRVGRKPKKRRRVEIKPENPENSGNTSGHLDNLNGGFSETLGKSG--EGVGK 118

Query: 114 FDMNRNVDLNDGFTGDLG-------EGEIANGNLRNMNVDLN 148
           F +N   DLNDGF  + G       E  +   N  ++N+++N
Sbjct: 119 FGVNGGFDLNDGFNFNNGCSLSVDCEENVTRSNYIDLNLNVN 160


>GSVIVT01025574001 assembled CDS
          Length = 1400

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 6/58 (10%)

Query: 5   GRIVDKEFKGYGVYSGVVQSYDPSSGFFEIVYEDGDSEELDFSEVVSLLERKEAVPVD 62
           GR V K F G   YSGVV  +D  +G++ +VYEDGD E+L++ E+  +L     VP+D
Sbjct: 72  GREVRKLFGGQ-YYSGVVTQFDKEAGWYRVVYEDGDFEDLEWHELEEVL-----VPLD 123