Jatropha Genome Database

JcCB0101961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0101961.10 - phase: 0 /partial
         (395 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037362001 assembled CDS                                       348   3e-96
GSVIVT01012447001 assembled CDS                                       343   6e-95
GSVIVT01030434001 assembled CDS                                        69   4e-12
GSVIVT01037667001 assembled CDS                                        64   1e-10

>GSVIVT01037362001 assembled CDS
          Length = 487

 Score =  348 bits (892), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 207/404 (51%), Positives = 249/404 (61%), Gaps = 43/404 (10%)

Query: 1   LPGRTDNEIKNYWNTRIKRLQRAGLPIYPPEVCLQVLNGSQESQDMGTLQSTDTHGSNLI 60
           LPGRTDNEIKNYWNTRIKRLQRAGLPIYPP+V ++ LNGSQ+SQ MG+L + +   S+L+
Sbjct: 113 LPGRTDNEIKNYWNTRIKRLQRAGLPIYPPDVSMKALNGSQQSQSMGSLTTGEASPSDLL 172

Query: 61  QNDHFEIPEVEFKNLELNRGLLSYSPTVLDISQSSMLKQGVSPSHSNNFMFPAMHPAKRL 120
           Q + FEIP V+FKNL+ N G+  Y PT  DI  S  L Q +  S   NFMFPAMHP KR 
Sbjct: 173 QGNSFEIPAVQFKNLQ-NPGIYPYPPTYFDILPSGSLTQNLGSSDGQNFMFPAMHPPKRF 231

Query: 121 RESETIFPTLDCSVSSGLPVFIQSTDHFSEKIADSFGVSSRCVPHTNTYGQPSLGVLSGI 180
           RESET F  L+   S+  P      D                     T G P      G 
Sbjct: 232 RESETFFSGLNDDFSNAFPALDLYDD---------------------TCGLP------GS 264

Query: 181 HALLNDNSSSSEPFCGLMKLELPSLQYSETQQDSWGMPASPLPSLESVDTLIQSPPTE-- 238
           HAL N N  SSEP  G MK+ELPSLQYSE Q  +WG    P+PS+ESVDTLIQSP TE  
Sbjct: 265 HALSNGN-FSSEPISGAMKVELPSLQYSEAQVGNWGS-LFPMPSIESVDTLIQSPQTEQI 322

Query: 239 QTDCLSPRSSGLLEAVLYESHTLKSSRNY-SGHQTSDNSIVPGD-VEDCSLNPCETEWDI 296
           Q DCLSP  SGLLEAV+YES  LK  R Y S HQ S+ +I   D V +  LNP E EW++
Sbjct: 323 QVDCLSPSKSGLLEAVVYESRNLK--RKYDSCHQASNTAIECNDVVGNLPLNPYEAEWNV 380

Query: 297 HGDPNSPLGHSVASVFSACTPISGGSSDEP-------GYDLKPETANQVSTPYIEEKEVP 349
           + DP SPLG+S ASVF+  TPISG S DEP       G  + PE  NQ++T Y  +KE P
Sbjct: 381 YVDPTSPLGNSAASVFNVHTPISGSSPDEPQSIETLLGCKVHPEPVNQIATHYDGKKETP 440

Query: 350 NHIDFTRPDALLGSGWFGLTGVCIKDPPIRTDAVGASFGDDVDS 393
           N +D +RPD LL + WFG      ++     DA+ A  G+D++S
Sbjct: 441 NQMDLSRPDRLLDADWFGPDTERGREQATWRDALNALLGEDINS 484


>GSVIVT01012447001 assembled CDS
          Length = 559

 Score =  343 bits (881), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 195/403 (48%), Positives = 248/403 (61%), Gaps = 15/403 (3%)

Query: 1   LPGRTDNEIKNYWNTRIKRLQRAGLPIYPPEVCLQVLNGSQESQDMGTLQSTDTHGSNLI 60
           LPGRTDNEIKNYWNTRIKR QRAGLP+YPPEVC Q L  SQ+ Q+ G +   D    +L+
Sbjct: 122 LPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCFQALQESQQIQNTGGINGGDKVHHDLL 181

Query: 61  QNDHFEIPEVEFKNLELNRGLLSYSPTVLDISQSSMLKQGVSPSHSNNFMFPAMHPAKRL 120
           Q + +EIP+V     + N+    Y P   ++S SSML +G   S    FM P MH  KR+
Sbjct: 182 QTNSYEIPDVILDGFKANQDAFPYVPDFPNLSTSSMLMKGFGSSQYCGFMAPTMHRQKRV 241

Query: 121 RESETIFPTLDCSVSSGLPVFIQSTDHFSEKIADSFGVSSRCVPHTNTYGQPSLGVLSGI 180
           RES  +FP  +    +G+P+F Q  D   +KIA SFG+     P            + G 
Sbjct: 242 RESPALFPGYN--ERNGIPLFDQIQDDTGDKIAQSFGLPYPFDPDPTNKDPLPFAGMQGS 299

Query: 181 HALLNDNSSSSEPFCGLMKLELPSLQYSETQQDSWGMPASPLPSLESVDTLIQSPP--TE 238
           HALLN N S+S+P  G +KLELPSLQY ET    WG  +SP P LESVD  IQSPP  T 
Sbjct: 300 HALLNGNFSASKPISGPVKLELPSLQYLETDLGGWGTSSSPPPLLESVDAFIQSPPSGTV 359

Query: 239 QTDCLSPRSSGLLEAVLYESHTLKSSRNYSGHQTSDNSIV-PGDVEDCSLNPCETEWDIH 297
           Q +CLSPR+SGLL+A+L+E+ T+ S +N+   +++++S V PGD+ D  LN CETEW+ +
Sbjct: 360 QLECLSPRNSGLLDALLHEAKTISSGKNHLSDKSANSSTVTPGDLADSCLNMCETEWEDY 419

Query: 298 GDPNSPLGHSVASVFSACTPI--SGGSSDE-------PGYDLKPETANQVSTPYIEEKEV 348
           GDP SPLGHS  S+FS CTPI  SG S DE       PG ++K E  +QV TP   EKE 
Sbjct: 420 GDPISPLGHSTTSIFSECTPISASGSSLDEHPPSETFPGCNVKAEPVDQVWTP-DGEKET 478

Query: 349 PNHIDFTRPDALLGSGWFGLTGVCIKDPPIRTDAVGASFGDDV 391
              +DF+RPD LLGS W   +    KD  +  DAV + F DD 
Sbjct: 479 STQLDFSRPDVLLGSNWIDQSTGGPKDQAMMNDAVASLFSDDF 521


>GSVIVT01030434001 assembled CDS
          Length = 426

 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 34/42 (80%)

Query: 1   LPGRTDNEIKNYWNTRIKRLQRAGLPIYPPEVCLQVLNGSQE 42
           LPGRTDNEIKNYWNTR+KR QRAGLP+YP  V  + L+  Q+
Sbjct: 113 LPGRTDNEIKNYWNTRVKRRQRAGLPLYPQGVQKEALHQQQQ 154


>GSVIVT01037667001 assembled CDS
          Length = 428

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 28/32 (87%)

Query: 1   LPGRTDNEIKNYWNTRIKRLQRAGLPIYPPEV 32
           LPGRTDNEIKNYWNTRIKR  R GLP+YP EV
Sbjct: 110 LPGRTDNEIKNYWNTRIKRRLRQGLPVYPQEV 141