Jatropha Genome Database

JcCB0101331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0101331.10 + phase: 0 
         (103 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018736001 assembled CDS                                       100   1e-22

>GSVIVT01018736001 assembled CDS
          Length = 605

 Score =  100 bits (250), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%), Gaps = 7/93 (7%)

Query: 2   QIRFPCEDFDDLFMGPRANWKGTHGPGSARSEIKELWIDKYKPRSLEELAVHKKKVEGVK 61
           ++R  CE+F +   G + +       GS+R   KELW+DKYKPRSLEELAVHKKKVE V 
Sbjct: 61  EMRLFCEEFGEGLTGFKVS------AGSSRCGGKELWVDKYKPRSLEELAVHKKKVEEVT 114

Query: 62  IWFEERLRASKEKIENNVLVITGQAGVGKSVSF 94
           +WFE+RLR S+E++  N+LVITGQAGVGKS + 
Sbjct: 115 VWFEKRLRTSREEM-CNLLVITGQAGVGKSATI 146