Jatropha Genome Database

JcCB0101161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0101161.10 - phase: 0 /partial
         (242 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016738001 assembled CDS                                       326   5e-90
GSVIVT01010359001 assembled CDS                                       151   3e-37
GSVIVT01025339001 assembled CDS                                       127   5e-30
GSVIVT01032029001 assembled CDS                                       124   5e-29
GSVIVT01025341001 assembled CDS                                       111   3e-25
GSVIVT01025340001 assembled CDS                                       107   6e-24
GSVIVT01000083001 assembled CDS                                       103   9e-23
GSVIVT01017943001 assembled CDS                                       100   6e-22
GSVIVT01000084001 assembled CDS                                       100   9e-22
GSVIVT01025342001 assembled CDS                                        95   3e-20
GSVIVT01005730001 assembled CDS                                        84   4e-17
GSVIVT01003798001 assembled CDS                                        84   6e-17

>GSVIVT01016738001 assembled CDS
          Length = 927

 Score =  326 bits (836), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 163/244 (66%), Positives = 191/244 (78%), Gaps = 7/244 (2%)

Query: 1   MALAKEIMGSSLFDKSLSISTSKVFLNHSFHQKXXXXXXXXXXXXXXR--MVKRVVRAPV 58
           MA+ KEIMG S+ D S  +S+SKV LNH F Q+              R   ++RVVR PV
Sbjct: 1   MAVVKEIMGCSMVDGSSFVSSSKVLLNHGFQQRNQLLGRPLWVPLEKRGLHLRRVVRQPV 60

Query: 59  AAISEDLIKASNTNTNNILPEKAVKFKVRAVITVRNKHKEDLKETIAKKWDAFMDKLGRN 118
           AA+SEDL+KAS         EKAVKFKVRAV+TV+ K+KEDLKET+ K  D+  DK+GRN
Sbjct: 61  AAVSEDLMKASAVPA-----EKAVKFKVRAVLTVKKKNKEDLKETLVKHLDSLTDKIGRN 115

Query: 119 VVLELISNEVDPKTNAPKKSKEAVLNDWSKKSNFKAERVHYTADFIVDSHFGIPGAITVS 178
           VVLELIS E+DPKT AP+KS  AV+ DWSKK+N KAERV+YTA+F VDS+FG PGAITV+
Sbjct: 116 VVLELISTEIDPKTRAPRKSTPAVVKDWSKKTNIKAERVNYTAEFTVDSNFGDPGAITVT 175

Query: 179 NKHQNEFFLETITLEGFARGPVHFPCNSWVQAKKDHPGKRIFFSNEPYLPSETPAGLRAL 238
           NKHQ EFFLE+IT+EGFA GPVHFPCNSWVQ+KKDHPGKR+FFSN+PYLP ETPAGLRAL
Sbjct: 176 NKHQKEFFLESITIEGFACGPVHFPCNSWVQSKKDHPGKRLFFSNKPYLPGETPAGLRAL 235

Query: 239 REKE 242
           REKE
Sbjct: 236 REKE 239


>GSVIVT01010359001 assembled CDS
          Length = 920

 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 80/199 (40%), Positives = 115/199 (57%), Gaps = 9/199 (4%)

Query: 52  RVVRAPVAA---ISEDLIKASNTNTNNIL-----PEKAVKFKVRAVITVRNKHKEDLKET 103
           R +RA +++     E   KA  +   N+L        A    VRAVIT+R K KE + E 
Sbjct: 44  RPIRAVISSEDKTVEGGAKAVESKDGNVLLSSSSSSSAKGIDVRAVITIRKKMKEKITEK 103

Query: 104 IAKKWDAFMDKLGRNVVLELISNEVDPKTNAPKKSKEAVLNDWSKKSNFKAERVHYTADF 163
           I  +W+ FM+ +G+ + ++L+S E+DP T +  KS E+ +  W  K +     V Y ADF
Sbjct: 104 IEDQWEGFMNGIGQGISIQLVSEEIDPVTMS-GKSVESFVRGWLPKPSNLPYIVEYAADF 162

Query: 164 IVDSHFGIPGAITVSNKHQNEFFLETITLEGFARGPVHFPCNSWVQAKKDHPGKRIFFSN 223
            V   FG PGA+ +SN H  EF L  I + GF  GP+ FP NSW+ ++KD+P  RI F N
Sbjct: 163 TVPLDFGSPGAVLISNLHGKEFHLMEIVIHGFDEGPIFFPANSWIHSRKDNPESRIIFRN 222

Query: 224 EPYLPSETPAGLRALREKE 242
           + YLPS+TP GL+ LR ++
Sbjct: 223 QAYLPSQTPPGLKDLRRED 241


>GSVIVT01025339001 assembled CDS
          Length = 901

 Score =  127 bits (318), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 72/179 (40%), Positives = 107/179 (59%), Gaps = 11/179 (6%)

Query: 66  IKASNTNTNNILPEKAVKFKVRAVITVRNKHKEDLKETI--AKKWDAFMDKLGRNVVLEL 123
           IKA  ++T+     K+V   V+A +TV+      L   I  +   D   D LG+ ++LE+
Sbjct: 55  IKAVASDTDT---RKSVS--VKATVTVKLTVGGFLSSLIGLSHGLDDVSDWLGKTLLLEV 109

Query: 124 ISNEVDPKTNAPKKSKEAVLNDWSKKSNFKAERVHYTADFIVDSHFGIPGAITVSNKHQN 183
           +S+EVDPKT   KK     +  ++ ++  K   V Y +DF++   FG  GA+ V N+H  
Sbjct: 110 VSSEVDPKTGLEKKP----IGAYAHRAAEKDGEVTYESDFVIPDDFGEIGAVLVQNEHHK 165

Query: 184 EFFLETITLEGFARGPVHFPCNSWVQAKKDHPGKRIFFSNEPYLPSETPAGLRALREKE 242
           E +L  I L+GF  GP+ F C+SWV +K D P KR+FF+N+ YLP ETP+GL+ +REKE
Sbjct: 166 EMYLRYIVLDGFPNGPIEFNCSSWVASKFDDPQKRVFFTNKSYLPLETPSGLKEIREKE 224


>GSVIVT01032029001 assembled CDS
          Length = 866

 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 62/139 (44%), Positives = 85/139 (61%), Gaps = 4/139 (2%)

Query: 104 IAKKWDAFMDKLGRNVVLELISNEVDPKTNAPKKSKEAVLNDWSKKSNFKAERVHYTADF 163
           I K  D + D +G+ ++LEL+S EVD  T   K      +  ++ K   + E V Y ++F
Sbjct: 121 ITKPLDVYADLVGKTLLLELVSAEVDSGTGLEK----GTIKGYAHKVRHEKEEVVYESEF 176

Query: 164 IVDSHFGIPGAITVSNKHQNEFFLETITLEGFARGPVHFPCNSWVQAKKDHPGKRIFFSN 223
           IV + FG  GAI V N+H  E F+  I L+G   GP+H  C+SWV +K D+P KRIFF+N
Sbjct: 177 IVPAGFGEIGAILVENEHHKEMFINNIVLDGLHNGPIHINCSSWVHSKFDNPKKRIFFTN 236

Query: 224 EPYLPSETPAGLRALREKE 242
           + YLP ETP+GL  LRE E
Sbjct: 237 KSYLPDETPSGLTKLREME 255


>GSVIVT01025341001 assembled CDS
          Length = 2408

 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 80/121 (66%), Gaps = 4/121 (3%)

Query: 122 ELISNEVDPKTNAPKKSKEAVLNDWSKKSNFKAERVHYTADFIVDSHFGIPGAITVSNKH 181
           E++S E+DPKT   KK     ++ +++++  K   V Y ++F++   FG  GA+ V N+H
Sbjct: 788 EIVSAELDPKTGLEKKP----ISGYARRTGQKDGEVIYESEFVIPGDFGEIGAVLVENEH 843

Query: 182 QNEFFLETITLEGFARGPVHFPCNSWVQAKKDHPGKRIFFSNEPYLPSETPAGLRALREK 241
           +NE +L+ I L G   GP+ F C+SWV+ K D P KR+FF+ + YLPS+TP GL +LREK
Sbjct: 844 KNEMYLKHIVLNGLPNGPIEFNCDSWVEPKFDKPEKRVFFTFKSYLPSQTPRGLNSLREK 903

Query: 242 E 242
           +
Sbjct: 904 D 904



 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 76/119 (63%), Gaps = 4/119 (3%)

Query: 124  ISNEVDPKTNAPKKSKEAVLNDWSKKSNFKAERVHYTADFIVDSHFGIPGAITVSNKHQN 183
            +S E+DP+T    +     ++ ++ +   +   V Y ++F++   FG  GA+ V N++++
Sbjct: 1617 VSAELDPQTGLETRP----ISRYAHRVGQEDGDVIYESEFVIPGDFGEIGAVLVQNEYRS 1672

Query: 184  EFFLETITLEGFARGPVHFPCNSWVQAKKDHPGKRIFFSNEPYLPSETPAGLRALREKE 242
            E FL+ I L G   GP+ F C SWVQ+K D P KRIFFSN+ YLPS+TP GL+ LREKE
Sbjct: 1673 EMFLKYIVLNGLPNGPIAFNCGSWVQSKFDDPEKRIFFSNKSYLPSQTPRGLKDLREKE 1731


>GSVIVT01025340001 assembled CDS
          Length = 872

 Score =  107 bits (266), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 6/163 (3%)

Query: 82  VKFKVRAVITVRNKHKEDLKETIA--KKWDAFMDKLGRNVVLELISNEVDPKTNAPKKSK 139
           +   V+A +TV+      L   +    + D     LG+++ LEL+S ++DP T   KK  
Sbjct: 37  MSISVKATVTVKLTIGGFLSSLVGLSHRLDDISSLLGKSLRLELVSADLDPNTGLEKKP- 95

Query: 140 EAVLNDWSKKSNFKAERVHYTADFIVDSHFGIPGAITVSNKHQNEFFLETITLEGFARGP 199
              +  ++ +   K     Y ++F +   FG  GA+ V N+ +NE +L+ I L G   GP
Sbjct: 96  ---IGRYAHRVGQKDGEAIYESNFEIPGDFGEIGAVLVQNELRNEMYLKYIVLNGLPSGP 152

Query: 200 VHFPCNSWVQAKKDHPGKRIFFSNEPYLPSETPAGLRALREKE 242
           + F C SWV++K D+P KRIFFSN+  LP +TP GL+ +REKE
Sbjct: 153 IAFNCGSWVESKFDNPEKRIFFSNKSCLPLQTPRGLKGMREKE 195


>GSVIVT01000083001 assembled CDS
          Length = 738

 Score =  103 bits (256), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 85/164 (51%), Gaps = 4/164 (2%)

Query: 83  KFKVRAVITVRNKHKEDLKETIAKKWDAFMDKLGRNVVLELISN-EVDPKTNAPKK-SKE 140
           K K++  + +  K+  D  +  A   D   + LG+ V L+L+S    DP      K  K 
Sbjct: 15  KKKIKGTVVLMKKNVLDFNDFNASVLDRVHELLGQGVSLQLVSAVHGDPANGLQGKLGKP 74

Query: 141 AVLNDW-SKKSNFKAERVHYTADFIVDSHFGIPGAITVSNKHQNEFFLETITLEGF-ARG 198
           A L DW +  ++  A    +   F  D   G PGA  + N H +EF+L T+TLE    RG
Sbjct: 75  AYLEDWITTITSLTAGESAFKVTFDWDEEIGEPGAFIIRNNHHSEFYLRTLTLEDVPGRG 134

Query: 199 PVHFPCNSWVQAKKDHPGKRIFFSNEPYLPSETPAGLRALREKE 242
            +HF CNSWV   K +   R+FF+N+ YLPSETP  LR  R+ E
Sbjct: 135 RIHFVCNSWVYPAKHYKTDRVFFTNQTYLPSETPGPLRKYRKGE 178


>GSVIVT01017943001 assembled CDS
          Length = 751

 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 85  KVRAVITVRNKHKEDLKETIAKKWDAFMDKLGRNVVLELIS-NEVDPKTN-APKKSKEAV 142
           K+   + +  K+  DL ++ A   D+  + +G++V L+LIS    DP+ N   K  K   
Sbjct: 32  KIEGRVVLMKKNVMDLNDSKASLIDSVYELVGKHVSLQLISATHADPENNLGGKIGKATC 91

Query: 143 LNDWSKKS-NFKAERVHYTADFIVDSHFGIPGAITVSNKHQNEFFLETITLEGF-ARGPV 200
           L  W+       A    +   F  +   G+PGA+ VSN H +EF+L ++TLE    +G +
Sbjct: 92  LQKWNCTGPAITARETEFAVTFDWEEGMGVPGALRVSNHHHSEFYLSSVTLEDVPGQGRI 151

Query: 201 HFPCNSWVQAKKDHPGKRIFFSNEPYLPSETPAGLRALREKE 242
           HF CNSWV   + +  +R+FFSN+ YLP  TP  LR  RE+E
Sbjct: 152 HFVCNSWVFPVR-YTNERVFFSNKAYLPCHTPEPLRQYREEE 192


>GSVIVT01000084001 assembled CDS
          Length = 900

 Score =  100 bits (248), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 82/164 (50%), Gaps = 4/164 (2%)

Query: 83  KFKVRAVITVRNKHKEDLKETIAKKWDAFMDKLGRNVVLELISN-EVDPKTNAPKK-SKE 140
           K K+   I +  K+  D  +  A   D   +  G+ V L+L+S    DP      K  K 
Sbjct: 56  KKKIEGTIVLMKKNVLDFNDFNAPVRDRVHELFGQGVSLQLVSAVHGDPANGLQGKIGKP 115

Query: 141 AVLNDWSKK-SNFKAERVHYTADFIVDSHFGIPGAITVSNKHQNEFFLETITLEGF-ARG 198
           A L DW    ++  A    +   F  D   G PGA  + N H +EF+L T+TLE    RG
Sbjct: 116 AYLEDWIITITSLTAGESAFKVTFDWDEEIGEPGAFIIRNNHHSEFYLRTLTLEDVPGRG 175

Query: 199 PVHFPCNSWVQAKKDHPGKRIFFSNEPYLPSETPAGLRALREKE 242
            +HF CNSWV   + +   R+FF+N+ YLPSETP  LR  RE E
Sbjct: 176 RIHFVCNSWVYPAQHYKTDRVFFTNQTYLPSETPGPLRKYREGE 219


>GSVIVT01025342001 assembled CDS
          Length = 817

 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 73/132 (55%), Gaps = 16/132 (12%)

Query: 124 ISNEVDPKTNA-------------PKKSKEAVLNDWSKKSNFKAERVHYTADFIVDSHFG 170
           +S E+DP+T +             PK   E    D  K      +   + + F++   FG
Sbjct: 16  VSAELDPQTGSQKKPINANAHQVLPKDGPEGGPKDGPKNG---PKDAIFESKFVIPGDFG 72

Query: 171 IPGAITVSNKHQNEFFLETITLEGFARGPVHFPCNSWVQAKKDHPGKRIFFSNEPYLPSE 230
             GA+ V N+H +E +L+ I L+G   GP+ F C SW++ K D+  KR+FF+N+ YLPS+
Sbjct: 73  EIGAVLVENEHSSEIYLQHIILDGLPNGPIRFHCGSWIEPKSDNSRKRLFFTNKLYLPSQ 132

Query: 231 TPAGLRALREKE 242
           TP GL+ LREKE
Sbjct: 133 TPEGLKNLREKE 144


>GSVIVT01005730001 assembled CDS
          Length = 641

 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 64/118 (54%)

Query: 125 SNEVDPKTNAPKKSKEAVLNDWSKKSNFKAERVHYTADFIVDSHFGIPGAITVSNKHQNE 184
           S  +DP T   K S++A L       +   +   Y   F V+  FGIPGA  + N+H+++
Sbjct: 53  STRLDPNTGKGKLSEKAYLKHGKCSEHNGTKITKYKVKFRVEPDFGIPGAFLIKNEHKHK 112

Query: 185 FFLETITLEGFARGPVHFPCNSWVQAKKDHPGKRIFFSNEPYLPSETPAGLRALREKE 242
           FFL++ TLE  A   + F C SW+         R+FFSN  YLP+ETP  L  LR++E
Sbjct: 113 FFLQSATLEVPANQSIQFNCKSWIYPFTKTKTNRLFFSNTVYLPNETPEALDELRKEE 170


>GSVIVT01003798001 assembled CDS
          Length = 619

 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 64/118 (54%)

Query: 125 SNEVDPKTNAPKKSKEAVLNDWSKKSNFKAERVHYTADFIVDSHFGIPGAITVSNKHQNE 184
           S  +DP T   K S++A L       +   +   Y   F V+  FGIPGA  + N+H+++
Sbjct: 53  STRLDPNTGKGKLSEKAYLKHGKSCEHNGTKITKYKVKFRVEPDFGIPGAFLIKNEHKHK 112

Query: 185 FFLETITLEGFARGPVHFPCNSWVQAKKDHPGKRIFFSNEPYLPSETPAGLRALREKE 242
           FFL++ TLE  A   + F C SW+         R+FFSN  YLP+ETP  L  LR++E
Sbjct: 113 FFLQSATLEVPANQSIQFNCKSWIYPFTKTKTNRLFFSNTVYLPNETPEALDELRKEE 170