Jatropha Genome Database

JcCB0101051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0101051.10 + phase: 2 /partial
         (161 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008552001 assembled CDS                                       299   4e-82
GSVIVT01036557001 assembled CDS                                       294   1e-80
GSVIVT01008133001 assembled CDS                                       292   6e-80
GSVIVT01012244001 assembled CDS                                       287   1e-78
GSVIVT01019151001 assembled CDS                                        60   5e-10

>GSVIVT01008552001 assembled CDS
          Length = 340

 Score =  299 bits (765), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 138/159 (86%), Positives = 145/159 (91%)

Query: 3   RYVDVVLTIPKGTLFPMCGMNLAFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCAKVIC 62
           RYVD V+TIPKGTLFPMCGMNL F+RELIGPAMYFGLMGDGQPIGRYDDMWAGWCAKVIC
Sbjct: 162 RYVDAVMTIPKGTLFPMCGMNLGFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCAKVIC 221

Query: 63  DHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEDIIPFFQSVVLPKECTNVVKCYI 122
           DH+ LGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEDIIPFFQSVV PKEC  V +CYI
Sbjct: 222 DHMSLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEDIIPFFQSVVFPKECITVQQCYI 281

Query: 123 ELSKLVKEKLGTIDPYFHKLGDAMVTWIEAWVELNSPAQ 161
           ELSK VKEKLG +DPYF KL D+MVTWIEAW ELN P +
Sbjct: 282 ELSKQVKEKLGHVDPYFQKLADSMVTWIEAWEELNPPTK 320


>GSVIVT01036557001 assembled CDS
          Length = 267

 Score =  294 bits (753), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 136/155 (87%), Positives = 145/155 (93%)

Query: 3   RYVDVVLTIPKGTLFPMCGMNLAFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCAKVIC 62
           R+VD VLTIPKGTLFPMCGMNLAF+R+LIGPAMYFGLMGDGQPIGRYDDMWAGWC KV C
Sbjct: 100 RFVDAVLTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVTC 159

Query: 63  DHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEDIIPFFQSVVLPKECTNVVKCYI 122
           DHLGLGVKTGLPYIWHSKASNPFVNLKKEY GI+WQE+IIPFFQSV LPK+CT V KCY+
Sbjct: 160 DHLGLGVKTGLPYIWHSKASNPFVNLKKEYNGIFWQEEIIPFFQSVSLPKDCTTVQKCYV 219

Query: 123 ELSKLVKEKLGTIDPYFHKLGDAMVTWIEAWVELN 157
           EL+KLVKEKLG +DPYF KLGDAMVTWIEAW ELN
Sbjct: 220 ELAKLVKEKLGKVDPYFVKLGDAMVTWIEAWDELN 254


>GSVIVT01008133001 assembled CDS
          Length = 301

 Score =  292 bits (747), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 134/155 (86%), Positives = 143/155 (92%)

Query: 3   RYVDVVLTIPKGTLFPMCGMNLAFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCAKVIC 62
           RYVD V+TIPKGTLFPMCGMNL FNRELIGPAMYFGLMGDGQPIGRYDDMWAGWC K+IC
Sbjct: 133 RYVDAVMTIPKGTLFPMCGMNLGFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCTKIIC 192

Query: 63  DHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEDIIPFFQSVVLPKECTNVVKCYI 122
           DH+GLG+KTGLPYIWHSKASNPFVNLKKEYKGIYWQE++IPFFQSV+LPKECT V KCYI
Sbjct: 193 DHMGLGIKTGLPYIWHSKASNPFVNLKKEYKGIYWQEELIPFFQSVILPKECTTVQKCYI 252

Query: 123 ELSKLVKEKLGTIDPYFHKLGDAMVTWIEAWVELN 157
           ELSK V+ KLG +D YF KL DAMVTWIEAW ELN
Sbjct: 253 ELSKQVRAKLGKVDEYFIKLADAMVTWIEAWDELN 287


>GSVIVT01012244001 assembled CDS
          Length = 269

 Score =  287 bits (735), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 133/158 (84%), Positives = 141/158 (89%)

Query: 3   RYVDVVLTIPKGTLFPMCGMNLAFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCAKVIC 62
           RYVD VLT+PKGTLFPMCGMNLAFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWC KVIC
Sbjct: 100 RYVDAVLTVPKGTLFPMCGMNLAFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCMKVIC 159

Query: 63  DHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEDIIPFFQSVVLPKECTNVVKCYI 122
           DHLG GVKTGLPYIWHSKASNPFVNLKKEY GIYWQE++IPFFQ+  LPKECT V +CY+
Sbjct: 160 DHLGWGVKTGLPYIWHSKASNPFVNLKKEYSGIYWQEELIPFFQAATLPKECTTVQQCYL 219

Query: 123 ELSKLVKEKLGTIDPYFHKLGDAMVTWIEAWVELNSPA 160
           ELSK VK KL  +DPYF KL DAM+TWIEAW ELN  A
Sbjct: 220 ELSKQVKAKLEKVDPYFVKLADAMITWIEAWDELNPSA 257


>GSVIVT01019151001 assembled CDS
          Length = 159

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 94  GIYWQEDIIPFFQSVVLPKECTNVVKCYIELSKLVKEKLGTIDPYFHKLGDAMVTWIEAW 153
            +   E+++PFFQSV L +       C +E+  LVKE+L T+DP F +   AM  WI+ W
Sbjct: 85  SVKLMEEVVPFFQSVRLSQAAVTTEDCMLEIVALVKERLATLDPVFARAAQAMADWIKLW 144