Jatropha Genome Database

JcCB0100701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0100701.10 - phase: 0 
         (240 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021749001 assembled CDS                                       385   e-107
GSVIVT01015720001 assembled CDS                                       343   4e-95
GSVIVT01019547001 assembled CDS                                       128   3e-30
GSVIVT01019545001 assembled CDS                                       122   1e-28
GSVIVT01019833001 assembled CDS                                       116   9e-27
GSVIVT01004648001 assembled CDS                                        49   2e-06

>GSVIVT01021749001 assembled CDS
          Length = 418

 Score =  385 bits (989), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 185/215 (86%), Positives = 197/215 (91%)

Query: 1   MLNIGRNRNQPRNNRSMPLGGLDYADPKRKGNIVGKIFLAAALTALCIIMLKQSPTFNTR 60
           MLN  R+RNQPR +RSMP GG++YADPKRK N+VGKI LAA LTALCI+MLKQS  FNT 
Sbjct: 1   MLNFTRSRNQPRPSRSMPFGGMEYADPKRKSNVVGKILLAATLTALCILMLKQSSNFNTP 60

Query: 61  SLFSVHEEGVTHVLVTGGAGYIGSHAALRLLKDGYRVTIVDNLSRGNLGAVKVLQELFPE 120
           S FS HE GVTHVLVTGGAGYIGSHAALRLLKD +RVTIVDNLSRGNLGA+KVLQE FPE
Sbjct: 61  SPFSRHEPGVTHVLVTGGAGYIGSHAALRLLKDSHRVTIVDNLSRGNLGAIKVLQEQFPE 120

Query: 121 PGRLQFIYADLGDAKAVNKIFSENAFDAVMHFAAVAYVGESTMDPLKYYHNITSNTLVVL 180
           PGRLQFIYADLGDAKAVNKIFSENAFDAVMHFAAVAYVGEST++PL+YYHNITSNTLVVL
Sbjct: 121 PGRLQFIYADLGDAKAVNKIFSENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVVL 180

Query: 181 ESMAAHDVKTLIYSSTCATYGEPEKMPITEDTPQV 215
           E+MAAH V TLIYSSTCATYGEPEKMPITE TPQV
Sbjct: 181 EAMAAHGVNTLIYSSTCATYGEPEKMPITEQTPQV 215


>GSVIVT01015720001 assembled CDS
          Length = 417

 Score =  343 bits (880), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 165/215 (76%), Positives = 186/215 (86%)

Query: 1   MLNIGRNRNQPRNNRSMPLGGLDYADPKRKGNIVGKIFLAAALTALCIIMLKQSPTFNTR 60
           MLN  RNR   + NRS  L  +D AD +RK N+ GK+ +A +L  LCII+LK+SP F++ 
Sbjct: 1   MLNYSRNRAHSKPNRSFSLEAMDLADSRRKSNVTGKVLMAISLITLCIIILKRSPNFSSP 60

Query: 61  SLFSVHEEGVTHVLVTGGAGYIGSHAALRLLKDGYRVTIVDNLSRGNLGAVKVLQELFPE 120
           S FS  + GVTHVLVTGGAGYIGSHAALRLLKD +RVTIVDNLSRGNLGAVKVLQ+LFP+
Sbjct: 61  SPFSHRQPGVTHVLVTGGAGYIGSHAALRLLKDSHRVTIVDNLSRGNLGAVKVLQQLFPD 120

Query: 121 PGRLQFIYADLGDAKAVNKIFSENAFDAVMHFAAVAYVGESTMDPLKYYHNITSNTLVVL 180
           P +LQFIYADLGDAKAVNKIFSEN FDAVMHFAAVAYVGESTMDPL+YYHNITSNTL+VL
Sbjct: 121 PAQLQFIYADLGDAKAVNKIFSENEFDAVMHFAAVAYVGESTMDPLRYYHNITSNTLMVL 180

Query: 181 ESMAAHDVKTLIYSSTCATYGEPEKMPITEDTPQV 215
           ++MAAH VKTLIYSSTCATYGEP+KMPITE TPQV
Sbjct: 181 KAMAAHGVKTLIYSSTCATYGEPKKMPITEGTPQV 215


>GSVIVT01019547001 assembled CDS
          Length = 348

 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 105/178 (58%), Gaps = 13/178 (7%)

Query: 73  VLVTGGAGYIGSHAALRLLKDGYRVTIVDNLSRGNLGAVKVLQELFPEPG-RLQFIYADL 131
           +L+TGGAGYIGSH  L+LL  G+R  +VDNL   +  A+  ++EL  E G  L F   DL
Sbjct: 5   ILITGGAGYIGSHTVLQLLLGGFRAVVVDNLDNSSEIAIHRVKELAAEFGDNLVFHKLDL 64

Query: 132 GDAKAVNKIFSENAFDAVMHFAAVAYVGESTMDPLKYYHNITSNTLVVLESMAAHDVKTL 191
            D +A+ ++F+   FDAV+HFA +  VGES   PL YY N    T+ +LE MAAH  K L
Sbjct: 65  RDKQALEQLFASTNFDAVIHFAGLKAVGESVQKPLLYYDNNLIGTITLLEVMAAHGCKKL 124

Query: 192 IYSSTCATYGEPEKMPITEDTP-----------QVIAEILR-VYVNQFDLCVCLIKIF 237
           ++SS+   YG P+++P TE+ P            VI +I R +Y +  +  + L++ F
Sbjct: 125 VFSSSATVYGWPKEVPCTEEFPLCAANPYGRTKLVIEDICRDIYGSDSEWKIVLLRYF 182


>GSVIVT01019545001 assembled CDS
          Length = 348

 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 90/142 (63%), Gaps = 1/142 (0%)

Query: 73  VLVTGGAGYIGSHAALRLLKDGYRVTIVDNLSRGNLGAVKVLQELFPEPG-RLQFIYADL 131
           +LVTGGAGYIGSH  L+LL  G+R  +VDNL   +  ++  +++L  E G  L F   DL
Sbjct: 5   ILVTGGAGYIGSHTVLQLLLGGFRAVVVDNLDNSSEISIHRVKKLAAEFGDNLLFHKLDL 64

Query: 132 GDAKAVNKIFSENAFDAVMHFAAVAYVGESTMDPLKYYHNITSNTLVVLESMAAHDVKTL 191
            D  A+ ++F+   FDAV+HFA +  VGES   PL Y+ N    T+ +LE MAAH  K L
Sbjct: 65  RDKPALEQLFASTNFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHGCKKL 124

Query: 192 IYSSTCATYGEPEKMPITEDTP 213
           ++SS+   YG P+++P TE+ P
Sbjct: 125 VFSSSATVYGWPKEVPCTEEFP 146


>GSVIVT01019833001 assembled CDS
          Length = 350

 Score =  116 bits (290), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 91/141 (64%), Gaps = 2/141 (1%)

Query: 73  VLVTGGAGYIGSHAALRLLKDGYRVTIVDNLSRGNLGAVKVLQELFPE--PGRLQFIYAD 130
           +LVTGGAG+IG+H  ++LL +G+ V I+DNL    L A++ +++L       +L F   D
Sbjct: 8   ILVTGGAGFIGTHTVVQLLSEGFTVWIIDNLDNSVLEAIERVRDLVGAELSRKLHFNLGD 67

Query: 131 LGDAKAVNKIFSENAFDAVMHFAAVAYVGESTMDPLKYYHNITSNTLVVLESMAAHDVKT 190
           L +   + K+FS+  FDAV+HFA +  VGES ++P +Y+ N    T+ + E MA ++ K 
Sbjct: 68  LRNKADLEKLFSQTKFDAVIHFAGLKAVGESVVNPRRYFDNNLIGTINLYEIMAKYNCKK 127

Query: 191 LIYSSTCATYGEPEKMPITED 211
           +++SS+   YG+P+K+P  ED
Sbjct: 128 MVFSSSATVYGQPDKIPCVED 148


>GSVIVT01004648001 assembled CDS
          Length = 255

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%)

Query: 73  VLVTGGAGYIGSHAALRLLKDGYRVTIVDNLSRGNLGAVKVLQELFPEPGRLQFIYADLG 132
           VLVTGGAG++GSH +  L + G  V  +DN +      +K  +    E   +  +  D+ 
Sbjct: 15  VLVTGGAGFVGSHVSAALKRRGDGVIGLDNFNNYYDPELKRHRRDLLERAGVFVVEGDIN 74

Query: 133 DAKAVNKIFSENAFDAVMHFAAVAYVGESTMDP 165
           D++ + K+F   AF  VMH AA A    +   P
Sbjct: 75  DSELLRKLFDVVAFTHVMHLAAQAVCKSADPQP 107