Jatropha Genome Database

JcCB0100521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0100521.10 - phase: 0 /partial
         (107 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019000001 assembled CDS                                       136   2e-33
GSVIVT01009680001 assembled CDS                                        59   6e-10

>GSVIVT01019000001 assembled CDS
          Length = 492

 Score =  136 bits (343), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/107 (63%), Positives = 80/107 (74%)

Query: 1   SSAQQDNMQWGHRQIEPENTSVTAGLGLGLPCDGGSGLKELMMGTPSVFGPKQTTLDFXX 60
           SS QQ+N+QW  +Q+EPE+TSV AGLGLGLPCD GSGLKELMMGTPS+FGPKQTTLD   
Sbjct: 376 SSGQQENLQWNRQQMEPESTSVAAGLGLGLPCDEGSGLKELMMGTPSLFGPKQTTLDLLG 435

Query: 61  XXXXXXXXXXXXXXXXITSIGSGMDVAAAAASFGGGEYSGKDLGRSS 107
                           ITSIG G+DVAAAAA++ GGE++GKD+GR S
Sbjct: 436 LGMAASGSPSGGLSALITSIGGGLDVAAAAATYRGGEFAGKDMGRVS 482


>GSVIVT01009680001 assembled CDS
          Length = 496

 Score = 58.5 bits (140), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 55/99 (55%), Gaps = 6/99 (6%)

Query: 1   SSAQQDN--MQW-GHRQIEPENTSVTAGLGLGLPCDGGSGLKELMMGTPSVFGPKQTTLD 57
           SSAQQD+   QW GH  ++ ++  V AGLGLGLP +GG  L  LMM   S+F  K TTLD
Sbjct: 380 SSAQQDSSTTQWSGH--VKADSNPVGAGLGLGLPSEGGPALTGLMMSPSSLFVNKPTTLD 437

Query: 58  FXXXXXXXXXXXXXXXXXXITSI-GSGMDVAAAAASFGG 95
                              +TSI G G+D+AAA + FGG
Sbjct: 438 LLGLGMVPGGASTAGLSALLTSISGGGLDIAAAGSPFGG 476