Jatropha Genome Database

JcCB0100471.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0100471.20 + phase: 0 /partial
         (98 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004810001 assembled CDS                                        61   1e-10

>GSVIVT01004810001 assembled CDS
          Length = 315

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/78 (46%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 19 GRCKSPCLAYHSFQASQDFCGHVSWGCLFPAESSSFIKGEAASLPYRSFSTSILTPGSSD 78
          G C SP +    F+ S   CG VS   LF  +SS    G +        +T+ILTP SS 
Sbjct: 20 GHCNSPMIMCPLFRTSDALCGLVSQDGLFSTDSSC-KTGSSFLSSRSLSTTTILTPESSG 78

Query: 79 GAFPSDLLSTKAVLTPER 96
           AFP +LLSTK VLTPER
Sbjct: 79 VAFPPELLSTKTVLTPER 96