Jatropha Genome Database
- JcCB0100471.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0100471.10 + phase: 2 /pseudo/partial
(72 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01004811001 assembled CDS 140 2e-34
GSVIVT01030488001 assembled CDS 139 2e-34
GSVIVT01009273001 assembled CDS 92 6e-20
GSVIVT01013790001 assembled CDS 87 2e-18
GSVIVT01007715001 assembled CDS 86 3e-18
GSVIVT01031241001 assembled CDS 80 2e-16
GSVIVT01019880001 assembled CDS 47 2e-06
GSVIVT01009779001 assembled CDS 47 2e-06
GSVIVT01035921001 assembled CDS 46 3e-06
GSVIVT01034073001 assembled CDS 45 5e-06
GSVIVT01012897001 assembled CDS 45 5e-06
>GSVIVT01004811001 assembled CDS
Length = 249
Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/68 (95%), Positives = 67/68 (98%), Gaps = 1/68 (1%)
Query: 6 ESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHP-HYYVDNVLGNPFP 64
ESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHP HYY+DNVLGNPFP
Sbjct: 182 ESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPGHYYMDNVLGNPFP 241
Query: 65 MDISPTLL 72
MD+SPTLL
Sbjct: 242 MDLSPTLL 249
>GSVIVT01030488001 assembled CDS
Length = 248
Score = 139 bits (351), Expect = 2e-34, Method: Composition-based stats.
Identities = 62/67 (92%), Positives = 66/67 (98%)
Query: 6 ESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPHYYVDNVLGNPFPM 65
ESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPHYY+D+V+GNPFPM
Sbjct: 182 ESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPHYYMDSVMGNPFPM 241
Query: 66 DISPTLL 72
D +PTLL
Sbjct: 242 DCTPTLL 248
>GSVIVT01009273001 assembled CDS
Length = 341
Score = 91.7 bits (226), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 39/46 (84%), Positives = 44/46 (95%)
Query: 6 ESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHP 51
E++K+ALAE+TGLDQKQINNWFINQRKRHWKPSEDMQF+VMD HP
Sbjct: 275 ETEKVALAETTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHP 320
>GSVIVT01013790001 assembled CDS
Length = 318
Score = 87.0 bits (214), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/52 (71%), Positives = 44/52 (84%)
Query: 6 ESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPHYYVDN 57
E+ K+ALAE+TGLDQKQINNWFINQRKRHWKPSE+MQF VMD ++ D+
Sbjct: 267 EADKIALAETTGLDQKQINNWFINQRKRHWKPSENMQFAVMDNHSGQFFTDD 318
>GSVIVT01007715001 assembled CDS
Length = 319
Score = 86.3 bits (212), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 45/52 (86%)
Query: 5 VESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPHYYVD 56
E K+ALAESTGLDQKQINNWFINQRKRHWKPSE+MQF VMD+ + ++++
Sbjct: 267 TEEDKIALAESTGLDQKQINNWFINQRKRHWKPSENMQFAVMDSIYGPFFMN 318
>GSVIVT01031241001 assembled CDS
Length = 310
Score = 80.5 bits (197), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/61 (60%), Positives = 44/61 (72%), Gaps = 5/61 (8%)
Query: 6 ESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPHYYVDNVLGNPFPM 65
E +KL L+E TGLDQKQINNWFINQRKRHWKPSEDM+F ++D N+ G P +
Sbjct: 246 EDEKLKLSEVTGLDQKQINNWFINQRKRHWKPSEDMRFALIDGVS-----GNMGGGPVFL 300
Query: 66 D 66
D
Sbjct: 301 D 301
>GSVIVT01019880001 assembled CDS
Length = 291
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 22/31 (70%)
Query: 5 VESQKLALAESTGLDQKQINNWFINQRKRHW 35
E K L E TGL KQINNWFINQRKR+W
Sbjct: 245 TEDDKAKLVEETGLQLKQINNWFINQRKRNW 275
>GSVIVT01009779001 assembled CDS
Length = 470
Score = 47.0 bits (110), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 6 ESQKLALAESTGLDQKQINNWFINQRKRHWKP 37
+S+KL LA TGL + Q++NWFIN R R WKP
Sbjct: 399 DSEKLMLASQTGLTKNQVSNWFINARVRLWKP 430
>GSVIVT01035921001 assembled CDS
Length = 219
Score = 46.2 bits (108), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 5 VESQKLALAESTGLDQKQINNWFINQRKRHW 35
E K L + TGL KQINNWFINQRKR+W
Sbjct: 161 TEEDKAKLVQETGLQLKQINNWFINQRKRNW 191
>GSVIVT01034073001 assembled CDS
Length = 561
Score = 45.4 bits (106), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 6 ESQKLALAESTGLDQKQINNWFINQRKRHWKP 37
++ KL LA+ TGL + Q++NWFIN R R WKP
Sbjct: 372 DTDKLMLAKQTGLSRNQVSNWFINARVRLWKP 403
>GSVIVT01012897001 assembled CDS
Length = 413
Score = 45.4 bits (106), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 5 VESQKLALAESTGLDQKQINNWFINQRKRHW 35
E K L + TGL KQINNWFINQRKR+W
Sbjct: 356 TEEDKARLVQETGLHLKQINNWFINQRKRNW 386