Jatropha Genome Database

JcCB0100231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0100231.10 - phase: 1 /partial
         (489 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001371001 assembled CDS                                       289   2e-78

>GSVIVT01001371001 assembled CDS
          Length = 583

 Score =  289 bits (740), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 178/349 (51%), Positives = 237/349 (67%), Gaps = 22/349 (6%)

Query: 131 KGATVKSEPLVTLMEIIRSNRHGSFFEGRLESQETEVYKNLVRQHLDLETIQTRLEQGSY 190
           K   VKS+PLV+ +EIIRS++H S FE RLE+QETEVYK++VRQH+DLE+IQT+L+ G+Y
Sbjct: 239 KRICVKSQPLVSFLEIIRSHKHSSLFERRLETQETEVYKSIVRQHVDLESIQTKLDDGTY 298

Query: 191 ASSNLSFYRDLLLLFNNAIVFFPKTSNESHAAYELRSLVTNEMKKETQKSDSTVAPLDIP 250
           +SS  +FYRDLLLLF NAIVFFPK S E+ AA ELR++V NE++K+   +   +    + 
Sbjct: 299 SSSPRAFYRDLLLLFTNAIVFFPKASAEALAAGELRAMVLNEVRKQQPPAPEHL----LL 354

Query: 251 PQPKSEPERSDSLLAKHKASAPIVVCRKRSSLSAKPSPLSFVQKIEHQQQSSDNEPVSDL 310
           PQPK E ERSDSLLAK K+SAPI+VCRKRSS+SAK S       ++  +  S+ +P  D+
Sbjct: 355 PQPKPELERSDSLLAKQKSSAPIIVCRKRSSISAKASSFG----VKAGESRSEEKPAVDI 410

Query: 311 KP-LAVEQSSLKIESKEKPVTGTRSSRRSNKNLVKSTNTPSKKPNVSPVTKVSTADKPET 369
           KP +  EQS +K  +KEK  TG RS RR  KN   + N      N S  T   ++DK ET
Sbjct: 411 KPSVREEQSLVKAGTKEKSTTGVRSLRRGGKNRSGNLNK-----NQSTSTNHGSSDKGET 465

Query: 370 PKIDKKKAEPSSLDKKRSAVDFLKRIKKNSPVEVSK---KNTRGAANGAGERKRDSPG-K 425
           PK +KKKA+ S+  KKR A DFLKRIKKNSP+++ K    +TR    G G  ++     K
Sbjct: 466 PKAEKKKADASASAKKRGAADFLKRIKKNSPMDMGKSTVNDTRSGRGGGGGEEKRKRNEK 525

Query: 426 GEKGKERVSRRNGDDKQ-MEESSPSKKNLGRPTKKGAEASKVSGKHGRD 473
           G+  ++RV R++G  KQ  +ESSPSK+++GRP KK A     +GK GR+
Sbjct: 526 GDGRRDRVLRQSGGGKQGKDESSPSKRSVGRPPKKAAAD---TGKRGRE 571