Jatropha Genome Database

JcCB0099951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0099951.10 + phase: 0 
         (266 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032466001 assembled CDS                                       413   e-116
GSVIVT01013736001 assembled CDS                                       376   e-105
GSVIVT01007745001 assembled CDS                                       316   8e-87
GSVIVT01007742001 assembled CDS                                       289   9e-79
GSVIVT01009165001 assembled CDS                                       213   1e-55
GSVIVT01015633001 assembled CDS                                       211   2e-55
GSVIVT01032226001 assembled CDS                                       181   4e-46
GSVIVT01007741001 assembled CDS                                        98   5e-21

>GSVIVT01032466001 assembled CDS
          Length = 335

 Score =  413 bits (1061), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 192/261 (73%), Positives = 222/261 (85%)

Query: 6   RKEMGKDSYEEAIXXXXXXXXXXXXXXATAAARVEQITAELQTASSDSKPFDAVERMKEG 65
           R++MG  SY+EA+                AAA+++QITA+L+++   S PFD VERMK G
Sbjct: 64  REDMGNGSYDEAVEGLRKLLREKANLEPVAAAKIDQITAQLKSSDGSSSPFDPVERMKTG 123

Query: 66  FIYFKKEKYDKNPGLYTELSKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMV 125
           FIYFKKEKYDKNP L+ EL+KGQSPKFMVFACSDSRVCPSHVLDFQPG+AFVVRNVANMV
Sbjct: 124 FIYFKKEKYDKNPALHAELAKGQSPKFMVFACSDSRVCPSHVLDFQPGDAFVVRNVANMV 183

Query: 126 PPFDQLKHTGVGAAVEYAVLHLKVENIVVIGHSACGGIKGLMSFPFDGNKSTDFIEDWVS 185
           P +D+++++GVG+AVEYAVLHLKVE+IVVIGHS+CGGIKGLMSFPFDG  STDFIEDWV 
Sbjct: 184 PAYDKIRYSGVGSAVEYAVLHLKVEHIVVIGHSSCGGIKGLMSFPFDGTSSTDFIEDWVK 243

Query: 186 IGLPAKAKVLAEHGNATFPEQCTHCEKEAVNVSLGNLLTYPFVRHGLVKKTLALKGGYYD 245
           IGLPAK+KV+AE G+  FPEQC +CEKEAVNVSLGNLL+YPFVR GLVKKTL LKGGYYD
Sbjct: 244 IGLPAKSKVVAECGDLPFPEQCAYCEKEAVNVSLGNLLSYPFVREGLVKKTLTLKGGYYD 303

Query: 246 FVSGSFELWGLEFGLSPPLSV 266
           FV G+FELWGL+FGLSP  SV
Sbjct: 304 FVKGTFELWGLDFGLSPSFSV 324


>GSVIVT01013736001 assembled CDS
          Length = 256

 Score =  376 bits (966), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/256 (70%), Positives = 206/256 (80%), Gaps = 2/256 (0%)

Query: 9   MGKDSYEEAIXXXXXXXXXXXXXXATAAARVEQITAELQTASSDSKPFDAVERMKEGFIY 68
           M  DS E+AI                AAA+++QITAEL+   + S+PFDAVER+K GF  
Sbjct: 1   MATDSCEDAIAELQKLLSEKCGLETVAAAKIKQITAELE--KTGSEPFDAVERIKTGFGR 58

Query: 69  FKKEKYDKNPGLYTELSKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPPF 128
           FK EKY+KNP LY EL+KGQSPKFMVFACSDSRVCPSH+LDFQPGEAF+VRN+ANMVPP+
Sbjct: 59  FKTEKYEKNPTLYDELAKGQSPKFMVFACSDSRVCPSHILDFQPGEAFMVRNIANMVPPY 118

Query: 129 DQLKHTGVGAAVEYAVLHLKVENIVVIGHSACGGIKGLMSFPFDGNKSTDFIEDWVSIGL 188
           DQ K++GVGAA+EYAVLHLKVENIVVIGHS CGGIKGLMS P DG  ++DFIE WV I L
Sbjct: 119 DQTKYSGVGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDDGTTASDFIEQWVQICL 178

Query: 189 PAKAKVLAEHGNATFPEQCTHCEKEAVNVSLGNLLTYPFVRHGLVKKTLALKGGYYDFVS 248
           PAK+KV  E+ + TF EQCT+CEKEAVNVSLGNLLTYPFVR  +VKKTLALKG +YDFV+
Sbjct: 179 PAKSKVKTEYTDLTFAEQCTNCEKEAVNVSLGNLLTYPFVREAVVKKTLALKGAHYDFVN 238

Query: 249 GSFELWGLEFGLSPPL 264
           GSFELW  E  LSPPL
Sbjct: 239 GSFELWSFEVNLSPPL 254


>GSVIVT01007745001 assembled CDS
          Length = 259

 Score =  316 bits (809), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 148/259 (57%), Positives = 191/259 (73%), Gaps = 1/259 (0%)

Query: 8   EMGKDSYEEAIXXXXXXXXXXXXXXATAAARVEQITAELQTASSDSKPFDAVERMKEGFI 67
           +M K S E AI                AAA++E++TA+LQ    + + FD V R+K+GFI
Sbjct: 2   DMAKSSTEVAIEGLKRLLSDKEGLDEIAAAKIEKLTADLQEQDHEEE-FDPVRRIKDGFI 60

Query: 68  YFKKEKYDKNPGLYTELSKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPP 127
           +FK   +DK P  Y +L++GQ PKF+VFACSDSRV PSHVL+F+PGEAF+ RN+ANMVP 
Sbjct: 61  HFKIHHFDKYPDYYKQLAEGQHPKFLVFACSDSRVSPSHVLNFKPGEAFMCRNIANMVPA 120

Query: 128 FDQLKHTGVGAAVEYAVLHLKVENIVVIGHSACGGIKGLMSFPFDGNKSTDFIEDWVSIG 187
           F+QL+++GVGA +EYAV HL+VENI+VIGHS CGGI+ LMS P DG  S DFI+DWV IG
Sbjct: 121 FNQLRYSGVGAVIEYAVKHLEVENILVIGHSRCGGIQALMSLPADGTTSNDFIDDWVKIG 180

Query: 188 LPAKAKVLAEHGNATFPEQCTHCEKEAVNVSLGNLLTYPFVRHGLVKKTLALKGGYYDFV 247
           LPAKAKV +E  +ATF EQC HCEKE+VN+SL NLL+YP+VR  L  + L L GGYYDFV
Sbjct: 181 LPAKAKVESEWSDATFEEQCEHCEKESVNLSLVNLLSYPYVRAALANRALKLMGGYYDFV 240

Query: 248 SGSFELWGLEFGLSPPLSV 266
           +G+F LW  +F ++P + +
Sbjct: 241 NGTFGLWKADFDITPEIII 259


>GSVIVT01007742001 assembled CDS
          Length = 261

 Score =  289 bits (740), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 137/233 (58%), Positives = 180/233 (77%), Gaps = 1/233 (0%)

Query: 35  AAARVEQITAELQTASSD-SKPFDAVERMKEGFIYFKKEKYDKNPGLYTELSKGQSPKFM 93
           AAA++E++TAELQ    +     D VER+K+GFI+FK   +DK P  Y +L++GQ PKF+
Sbjct: 29  AAAKIEKLTAELQEQEQEQDHECDPVERIKDGFIHFKIHHFDKYPDYYKQLAEGQHPKFL 88

Query: 94  VFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPPFDQLKHTGVGAAVEYAVLHLKVENIV 153
           VFACSDSRV PSHVL+F+PGEAF+ RN+AN+VP F+QL+++GVGA +EYAV HL+VENI+
Sbjct: 89  VFACSDSRVSPSHVLNFKPGEAFMCRNIANLVPAFNQLRYSGVGAVIEYAVKHLEVENIL 148

Query: 154 VIGHSACGGIKGLMSFPFDGNKSTDFIEDWVSIGLPAKAKVLAEHGNATFPEQCTHCEKE 213
           VIGHS CGGI+ LMS P DG  S DFI+DWV I LPAKAKV +E  +ATF +QC +  +E
Sbjct: 149 VIGHSRCGGIEALMSLPADGTTSNDFIDDWVKIALPAKAKVESEWSDATFEQQCEYLGRE 208

Query: 214 AVNVSLGNLLTYPFVRHGLVKKTLALKGGYYDFVSGSFELWGLEFGLSPPLSV 266
           +VN+SL NLL+YP+V+  L  K L L GGYYDFV+G+F LW  +F + PP+ +
Sbjct: 209 SVNLSLVNLLSYPYVQAALANKALKLMGGYYDFVNGTFGLWKADFDIKPPIII 261


>GSVIVT01009165001 assembled CDS
          Length = 328

 Score =  213 bits (541), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 105/217 (48%), Positives = 149/217 (68%), Gaps = 2/217 (0%)

Query: 45  ELQTASSDSKPFDAVERMKEGFIYFKKEKYDKNPGLYTELSKGQSPKFMVFACSDSRVCP 104
           E+++     +  D  E +K  F+ FKK+KY + P  +  L+K QSPKFMV AC+DSRVCP
Sbjct: 96  EMESLDKTDQGLDFFEELKHRFLCFKKQKYLEEPEHFQALAKAQSPKFMVIACADSRVCP 155

Query: 105 SHVLDFQPGEAFVVRNVANMVPPFDQLKHTGVGAAVEYAVLHLKVENIVVIGHSACGGIK 164
           S++L FQPGEAF++RNVAN+VPP +    +   AA+E+AV  L+VENI+VIGHS+C GI+
Sbjct: 156 SNILGFQPGEAFMIRNVANLVPPVEN-GPSETNAALEFAVNTLEVENILVIGHSSCAGIE 214

Query: 165 GLMSFPFDGNKSTDFIEDWVSIGLPAKAKVLAEHGNATFPEQCTHCEKEAVNVSLGNLLT 224
            L+    D N S+ F+E+WV+ G  AK +  A  G+  F +QC +CEKE++N SL NLLT
Sbjct: 215 TLVRMRDDVN-SSSFVENWVANGKVAKLRTKAAAGHLGFYQQCKYCEKESINHSLLNLLT 273

Query: 225 YPFVRHGLVKKTLALKGGYYDFVSGSFELWGLEFGLS 261
           YP++     K  L++ GGYYDF++ +FE W ++F  S
Sbjct: 274 YPWIEDRERKGLLSIHGGYYDFLNCTFEKWTIDFKRS 310


>GSVIVT01015633001 assembled CDS
          Length = 301

 Score =  211 bits (538), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/219 (46%), Positives = 147/219 (67%), Gaps = 2/219 (0%)

Query: 40  EQITAELQTASSDSKPFDAVERMKEGFIYFKKEKYDKNPGLYTELSKGQSPKFMVFACSD 99
           E  +  L++ +     +D  + +K  F+ FKK KY +N   +  L+  Q+PKFMV AC+D
Sbjct: 70  ELTSDRLESIAEIENRYDVFDEVKHRFLSFKKHKYLENLECFQNLATAQAPKFMVIACAD 129

Query: 100 SRVCPSHVLDFQPGEAFVVRNVANMVPPFDQLKHTGVGAAVEYAVLHLKVENIVVIGHSA 159
           SRVCPS +L F+PGEAF+VRNVAN+VP ++    T   AA+E+AV  L+VENI+VIGHS 
Sbjct: 130 SRVCPSKILGFEPGEAFMVRNVANLVPLYEN-GPTETNAALEFAVNTLEVENILVIGHSC 188

Query: 160 CGGIKGLMSFPFDGNKSTDFIEDWVSIGLPAKAKVLAEHGNATFPEQCTHCEKEAVNVSL 219
           CGGI+ LM    + + S+ FI+ WV +G  AK +  A     +F +QC +CEKE++N SL
Sbjct: 189 CGGIRALMGMEEEVD-SSSFIQSWVVVGKNAKLRAKATASKLSFDQQCRNCEKESINCSL 247

Query: 220 GNLLTYPFVRHGLVKKTLALKGGYYDFVSGSFELWGLEF 258
            NLLTYP+++  + +  L++ GGYYDFV+ +FE W L++
Sbjct: 248 LNLLTYPWIKERVERGMLSIHGGYYDFVNCTFEKWTLDY 286


>GSVIVT01032226001 assembled CDS
          Length = 377

 Score =  181 bits (458), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 84/155 (54%), Positives = 113/155 (72%)

Query: 37  ARVEQITAELQTASSDSKPFDAVERMKEGFIYFKKEKYDKNPGLYTELSKGQSPKFMVFA 96
           A V++  A   +A  ++  +    R+K+GFI+FK   + K    Y +L++GQ PKF+VFA
Sbjct: 215 AAVKEFPALDSSALDNNTTWIWRRRIKDGFIHFKIHYFGKYLDYYKQLAEGQHPKFLVFA 274

Query: 97  CSDSRVCPSHVLDFQPGEAFVVRNVANMVPPFDQLKHTGVGAAVEYAVLHLKVENIVVIG 156
           CSDSRV PSHVL+F+PG+AF  RNVAN VP F+QL+++GVGA +EYAV +L+VENI++I 
Sbjct: 275 CSDSRVSPSHVLNFRPGKAFTCRNVANSVPAFNQLRYSGVGAVIEYAVKYLEVENILIIR 334

Query: 157 HSACGGIKGLMSFPFDGNKSTDFIEDWVSIGLPAK 191
           HS CGG + LMS P DG  S DFI+DWV I LPA+
Sbjct: 335 HSRCGGTEALMSLPADGTTSNDFIDDWVKIALPAR 369


>GSVIVT01007741001 assembled CDS
          Length = 169

 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 61/85 (71%)

Query: 176 STDFIEDWVSIGLPAKAKVLAEHGNATFPEQCTHCEKEAVNVSLGNLLTYPFVRHGLVKK 235
           + DFI+DWV IGLPAKAKV +E G+ +F + C +CEKE+ N SL NLL+ P+ R  + ++
Sbjct: 72  TLDFIDDWVKIGLPAKAKVKSEWGDKSFEQHCQYCEKESGNSSLVNLLSDPYARAAVAER 131

Query: 236 TLALKGGYYDFVSGSFELWGLEFGL 260
            L L GGYY+FV G+F LW ++  +
Sbjct: 132 DLKLVGGYYNFVHGTFGLWEVDVDI 156