Jatropha Genome Database

JcCB0099081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0099081.10 + phase: 0 /partial
         (158 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007958001 assembled CDS                                       227   2e-60
GSVIVT01035957001 assembled CDS                                       184   1e-47
GSVIVT01003875001 assembled CDS                                       155   6e-39
GSVIVT01022808001 assembled CDS                                       149   4e-37

>GSVIVT01007958001 assembled CDS
          Length = 1010

 Score =  227 bits (578), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 115/158 (72%), Positives = 122/158 (77%)

Query: 1    VLAAKSPTLLDFHLDLVSLEPATKIQLKSLAEEMQAIIKGLEKVKQELAASEKDGPVSEV 60
            VLA+KSP LLDFH DLVSLE A+KIQLKSLAEEMQAI+KGLEKVKQEL ASE DGPVS++
Sbjct: 853  VLASKSPGLLDFHEDLVSLEAASKIQLKSLAEEMQAIMKGLEKVKQELNASENDGPVSDI 912

Query: 61   FRKTLKEFISVAETEVASVTNLYSVVGRNADALALYFGEDPARCPFEQVTATLLNFVRLF 120
            FRKTLKEFI VAE +V SVTNLYSVVGRNADALALYFGEDP RCPFEQVT TLLNF+RLF
Sbjct: 913  FRKTLKEFIGVAEGQVGSVTNLYSVVGRNADALALYFGEDPVRCPFEQVTVTLLNFIRLF 972

Query: 121  RKAHXXXXXXXXXXXXXXXXXXXXXXXXGINLTKKSEK 158
            RKAH                        GINLTKK  K
Sbjct: 973  RKAHEENCKQAELERKKAQKEVEMEKAKGINLTKKGVK 1010


>GSVIVT01035957001 assembled CDS
          Length = 1642

 Score =  184 bits (468), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/124 (75%), Positives = 102/124 (82%)

Query: 1    VLAAKSPTLLDFHLDLVSLEPATKIQLKSLAEEMQAIIKGLEKVKQELAASEKDGPVSEV 60
            VLA K P LLDF  DL+ LE +TKIQLK LAEEMQAI KGLEKV QEL ASE DGPVSE 
Sbjct: 1401 VLAEKLPELLDFPKDLLHLEASTKIQLKYLAEEMQAISKGLEKVVQELTASENDGPVSEN 1460

Query: 61   FRKTLKEFISVAETEVASVTNLYSVVGRNADALALYFGEDPARCPFEQVTATLLNFVRLF 120
            F KTLKEF+  AE EV S+ +LYS VGRNADALALYFGEDPARCPFEQV +TLLNFVR+F
Sbjct: 1461 FCKTLKEFLVFAEAEVRSLASLYSGVGRNADALALYFGEDPARCPFEQVVSTLLNFVRMF 1520

Query: 121  RKAH 124
             +AH
Sbjct: 1521 TRAH 1524


>GSVIVT01003875001 assembled CDS
          Length = 947

 Score =  155 bits (393), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 78/106 (73%), Positives = 87/106 (82%)

Query: 1   VLAAKSPTLLDFHLDLVSLEPATKIQLKSLAEEMQAIIKGLEKVKQELAASEKDGPVSEV 60
           VLA K P +LDF  DL SLEPA+KIQLK LAEEMQAI KGLEKV QEL++SE DGP+SE 
Sbjct: 842 VLADKLPEVLDFSKDLASLEPASKIQLKFLAEEMQAISKGLEKVMQELSSSENDGPISEN 901

Query: 61  FRKTLKEFISVAETEVASVTNLYSVVGRNADALALYFGEDPARCPF 106
           F KTLK+F+  AETEV S+ +LYS VGRN DAL LYFGEDPARCPF
Sbjct: 902 FCKTLKKFLHFAETEVRSLASLYSGVGRNVDALILYFGEDPARCPF 947


>GSVIVT01022808001 assembled CDS
          Length = 1082

 Score =  149 bits (377), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/113 (65%), Positives = 88/113 (77%)

Query: 11   DFHLDLVSLEPATKIQLKSLAEEMQAIIKGLEKVKQELAASEKDGPVSEVFRKTLKEFIS 70
            DF  DLV LE A+KIQLKSLAEEMQA+ KGLEKV+QEL AS  DG +S  F+K LK F+ 
Sbjct: 919  DFDKDLVHLEAASKIQLKSLAEEMQAVSKGLEKVEQELTASVNDGAISAGFQKVLKNFLD 978

Query: 71   VAETEVASVTNLYSVVGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKA 123
             AE EV S+ +LYS VGRNAD+L+ YFGEDPARCPFEQVT  L+ F++ F K+
Sbjct: 979  TAEAEVRSLISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILVVFIKTFNKS 1031