Jatropha Genome Database

JcCB0098751.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0098751.20 + phase: 0 /partial
         (227 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003940001 assembled CDS                                       388   e-108
GSVIVT01021184001 assembled CDS                                       361   e-100
GSVIVT01024702001 assembled CDS                                       301   2e-82
GSVIVT01012373001 assembled CDS                                        94   4e-20

>GSVIVT01003940001 assembled CDS
          Length = 605

 Score =  388 bits (996), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/225 (85%), Positives = 203/225 (90%)

Query: 1   MDTKIGSLDTCKPTNGDLCSPPNSTVSTIQGSVSPTFHTPPDSTLGRHLARRLVQIGVSD 60
           MDTKI   D   PTN ++  P N  VS+I  SV P+  +  ++TLGRHLARRLVQIGVSD
Sbjct: 1   MDTKISVTDASVPTNSNVGCPSNGIVSSILSSVPPSVISSSEATLGRHLARRLVQIGVSD 60

Query: 61  VFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 120
           VFSVPGDFNLTLLDHLIAEPGL  IGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV
Sbjct: 61  VFSVPGDFNLTLLDHLIAEPGLKNIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 120

Query: 121 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCFQAVVNN 180
           LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQE RCFQTVTC+QAVVNN
Sbjct: 121 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQEFRCFQTVTCYQAVVNN 180

Query: 181 LEDAHEQIDTAISTALKESKPVYLSVSCNLPGIPHPTFSREPVPF 225
           LEDAHEQIDTAISTALKESKPVY+S+SCNLPGIPHPTFSREPVPF
Sbjct: 181 LEDAHEQIDTAISTALKESKPVYISISCNLPGIPHPTFSREPVPF 225


>GSVIVT01021184001 assembled CDS
          Length = 577

 Score =  361 bits (927), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/182 (95%), Positives = 178/182 (97%)

Query: 44  TLGRHLARRLVQIGVSDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARS 103
           TLG HLARRLVQIGV DVFSVPGDFNLTLLDHLIAEPGLNL+GCCNELNAGYAADGYAR+
Sbjct: 16  TLGGHLARRLVQIGVRDVFSVPGDFNLTLLDHLIAEPGLNLVGCCNELNAGYAADGYARA 75

Query: 104 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQ 163
           RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF+Q
Sbjct: 76  RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 135

Query: 164 ELRCFQTVTCFQAVVNNLEDAHEQIDTAISTALKESKPVYLSVSCNLPGIPHPTFSREPV 223
           ELR FQTVTC QAVVN+LEDAHEQIDTAISTALKESKPVYLS+SCNLPGIPHPTFSREPV
Sbjct: 136 ELRSFQTVTCTQAVVNHLEDAHEQIDTAISTALKESKPVYLSISCNLPGIPHPTFSREPV 195

Query: 224 PF 225
           PF
Sbjct: 196 PF 197


>GSVIVT01024702001 assembled CDS
          Length = 577

 Score =  301 bits (770), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 157/227 (69%), Positives = 174/227 (76%), Gaps = 32/227 (14%)

Query: 1   MDTKIGS-LDTCKPTNGDLCSPP-NSTVSTIQGSVSPTFHTPPDSTLGRHLARRLVQIGV 58
           MD KIGS LD+CKP N D+ S P N TVSTIQ S SP   T   +TLG H+A RLVQIGV
Sbjct: 1   MDNKIGSQLDSCKPANNDVGSAPQNGTVSTIQDSPSPAHPTGSRATLGSHIAHRLVQIGV 60

Query: 59  SDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 118
                                         N+LNAGYAADGYAR+RGVGACVVTFTVGGL
Sbjct: 61  ------------------------------NDLNAGYAADGYARARGVGACVVTFTVGGL 90

Query: 119 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCFQAVV 178
           S+LNAIAGAYSENLPVICIVGGPN+NDYGTNRILHHTIGLPDFSQE+RCFQ VTC+QA++
Sbjct: 91  SILNAIAGAYSENLPVICIVGGPNTNDYGTNRILHHTIGLPDFSQEVRCFQPVTCYQAII 150

Query: 179 NNLEDAHEQIDTAISTALKESKPVYLSVSCNLPGIPHPTFSREPVPF 225
           N+L++AHE ID AISTALKESKPVY+SVSCNLP I HPTFSREP+PF
Sbjct: 151 NHLDEAHELIDKAISTALKESKPVYISVSCNLPTIFHPTFSREPIPF 197


>GSVIVT01012373001 assembled CDS
          Length = 198

 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 57/82 (69%), Gaps = 1/82 (1%)

Query: 26  VSTIQGSVSPTFH-TPPDSTLGRHLARRLVQIGVSDVFSVPGDFNLTLLDHLIAEPGLNL 84
           +     SV+PT      ++TLG HLARRLVQIGVSDVFS+PGDFNLTLLDHLIAE GLN 
Sbjct: 92  IEAKHASVAPTIDIASSEATLGSHLARRLVQIGVSDVFSIPGDFNLTLLDHLIAELGLNN 151

Query: 85  IGCCNELNAGYAADGYARSRGV 106
           IGC +     ++   + RS GV
Sbjct: 152 IGCWSLTQQLWSQSFWQRSSGV 173