Jatropha Genome Database

JcCB0097471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0097471.10 + phase: 0 
         (511 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027673001 assembled CDS                                       797   0.0  
GSVIVT01027670001 assembled CDS                                       660   0.0  
GSVIVT01038750001 assembled CDS                                       178   5e-45

>GSVIVT01027673001 assembled CDS
          Length = 521

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/519 (76%), Positives = 430/519 (82%), Gaps = 19/519 (3%)

Query: 3   LKNNYAFPNLSKPQRP---------KSLPSVSFKSQFHGSPISRGLIQCQRRGDCTVRMG 53
           ++N+   PNLSKP +P         +S P+VS  S  H   +S  ++  +          
Sbjct: 12  VQNSPLLPNLSKPHKPTPPFTTPFLRSGPNVSSFSLKHERAVSNSIVSVR---------A 62

Query: 54  SIRVSASVATAEKPSTVPEIVLQPIKEISGTVKLPGSKSLSNRILLLAALSEGTTVVDNL 113
             RVSASVAT EKPST PEIVLQPIKEISGT+ LPGSKSLSNRILLLAALSEGTTVVDNL
Sbjct: 63  PFRVSASVATKEKPSTAPEIVLQPIKEISGTITLPGSKSLSNRILLLAALSEGTTVVDNL 122

Query: 114 LNSDDVRYMLGALRTLGLHVEDNSELKQAIVGGCGGYFPVGKESKDDIELFLGNAGTAMR 173
           LNS+DV YMLGALRTLGLHVE+ SE K+ IV GCGG FP G  S  +++LFLGNAGTAMR
Sbjct: 123 LNSEDVHYMLGALRTLGLHVEEQSENKRVIVQGCGGQFPAGNGSVGEVQLFLGNAGTAMR 182

Query: 174 PLTAAVTAAGGNSSYILDGVPRMRERPIGDLVVGLKQLGADVACS-PTNCPPVRVNAKGG 232
           PLTAAVTAAGGN+SY+LDGVPRMRERPIGDLV GLKQLGADV C   TNCPPVRVN  GG
Sbjct: 183 PLTAAVTAAGGNASYVLDGVPRMRERPIGDLVTGLKQLGADVNCFLGTNCPPVRVNGNGG 242

Query: 233 LPGGKVKLSGSISSQYXXXXXXXXXXXXGDVEIEIIDKLISIPYVEMTLKLMERYGVNVE 292
           LPGGKVKLSGSISSQY            GDVEIEIIDKLISIPYVEMTLKLMER+GV+VE
Sbjct: 243 LPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIIDKLISIPYVEMTLKLMERFGVSVE 302

Query: 293 HSGSWDRFFIRGGQKYRSPGNSYVEGDASSASYFLXXXXXXXXXXXVEGCGTSSLQGDVK 352
           HS +WDRF IRGGQKY+SPGN++VEGDASSASYFL           VEGCGTSSLQGDVK
Sbjct: 303 HSNTWDRFLIRGGQKYKSPGNAFVEGDASSASYFLAGAAVTGGTVTVEGCGTSSLQGDVK 362

Query: 353 FAEVLEKMGAKVTWTENSVTVTGPPRNSPSQKHLRAVDVNMNKMPDVAMTLAVVALFADG 412
           FAEVLE+MGAKV+W ENSVTVTGPPR+S  +KHLRA+DVNMNKMPDVAMTLAVVAL+ADG
Sbjct: 363 FAEVLEQMGAKVSWMENSVTVTGPPRDSSGRKHLRAIDVNMNKMPDVAMTLAVVALYADG 422

Query: 413 PTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLNVAEIDTYDDHRM 472
           PTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLNV  IDTYDDHRM
Sbjct: 423 PTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLNVTSIDTYDDHRM 482

Query: 473 AMAFSLAACGDVPVTIKDPGCTRKTFPDYFEVLERFTKH 511
           AMAFSLAAC DVPVTIKDPGCTRKTFPDYFEVL+RFTKH
Sbjct: 483 AMAFSLAACADVPVTIKDPGCTRKTFPDYFEVLQRFTKH 521


>GSVIVT01027670001 assembled CDS
          Length = 463

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/447 (77%), Positives = 370/447 (82%), Gaps = 15/447 (3%)

Query: 55  IRVSASVATAEKPSTVPEIVLQPIKEISGTVKLPGSKSLSNRILLLAALSEGTTVVDNLL 114
            RVSASVAT EK STVPEIVLQPIKEISGT+ LPGSKSLSNRILLLAALSEGTTVVDNLL
Sbjct: 30  FRVSASVATKEKLSTVPEIVLQPIKEISGTITLPGSKSLSNRILLLAALSEGTTVVDNLL 89

Query: 115 NSDDVRYMLGALRTLGLHVEDNSELKQAIVGGCGGYFPVGKESKDDIELFLGNAGTAMRP 174
           NS+DV YMLGALRTLGL VE+ SE K+ IV GCGG FPVG  S D ++LFLGN  TA R 
Sbjct: 90  NSEDVHYMLGALRTLGLQVEEQSENKRVIVQGCGGQFPVGNGSVDQVQLFLGNCATATRA 149

Query: 175 LTAAVTAAGGNSSYILDGVPRMRERPIGDLVVGLKQLGADVACS-PTNCPPVRVNAKGGL 233
           LTAAVTAAGGN+SY+LDGV RMRERPIGDLV GLKQLGADV C   TNCPPV VN  GGL
Sbjct: 150 LTAAVTAAGGNASYVLDGVLRMRERPIGDLVTGLKQLGADVNCFLGTNCPPVYVNGNGGL 209

Query: 234 PGGKVKLSGSISSQYXXXXXXXXXXXXGDVEIEIIDKLISIPYVEMTLKLMERYGVNVEH 293
           PGGKVKLSGSISSQY            GDVEIEIID+LISIPYVEMTLK+MER+GV+VEH
Sbjct: 210 PGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIIDRLISIPYVEMTLKVMERFGVSVEH 269

Query: 294 SGSWDR-FFIRGGQKYRSPGNSYVEGDASSASYFLXXXXXXXXXXXVEGCGTSSLQGDVK 352
             +WDR F IRGG+KY             +ASYFL           VEGCGTSSLQGDVK
Sbjct: 270 GNTWDRRFLIRGGKKY-------------NASYFLAGAAVTGGTVTVEGCGTSSLQGDVK 316

Query: 353 FAEVLEKMGAKVTWTENSVTVTGPPRNSPSQKHLRAVDVNMNKMPDVAMTLAVVALFADG 412
           FAEVLE+ GAKV+WTENSVTVTGPPR+S  +KHLRA+DVNMN+MPDVA+TLAVVAL+ADG
Sbjct: 317 FAEVLEQTGAKVSWTENSVTVTGPPRDSSGRKHLRAIDVNMNEMPDVAITLAVVALYADG 376

Query: 413 PTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLNVAEIDTYDDHRM 472
           PTAIRDVASWRVKETERMIAICTELRKLGATV EGPDYCVITPPEKLNV  IDTYDDHRM
Sbjct: 377 PTAIRDVASWRVKETERMIAICTELRKLGATVVEGPDYCVITPPEKLNVTSIDTYDDHRM 436

Query: 473 AMAFSLAACGDVPVTIKDPGCTRKTFP 499
           AMAFSLAAC DVPVTIKDPGCT++  P
Sbjct: 437 AMAFSLAACADVPVTIKDPGCTKEKLP 463


>GSVIVT01038750001 assembled CDS
          Length = 622

 Score =  178 bits (452), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 97/187 (51%), Positives = 116/187 (62%), Gaps = 37/187 (19%)

Query: 167 NAGTAMRPLTAAVTAAGGNSSYILDGVPRMRERPIGDLVVGLKQLGADV-ACSPTNCPPV 225
           NAGT MRPL AAVTAAGG++SY++DGV RMRE  IGDLV GLKQLGADV     TNC PV
Sbjct: 372 NAGTVMRPLIAAVTAAGGDASYVIDGVLRMRETSIGDLVTGLKQLGADVNGFLGTNCSPV 431

Query: 226 RVNAKGGLPGGKVKLSGSISSQYXXXXXXXXXXXXGDVEIEIIDKLISIPYVEMTLKLME 285
           R+                                     + ++    SIPYVE TLKLME
Sbjct: 432 RI-----------------------------------WRLRLLINSFSIPYVETTLKLME 456

Query: 286 RYGVNVEHSGSWDRFFIRGG-QKYRSPGNSYVEGDASSASYFLXXXXXXXXXXXVEGCGT 344
           R+GV+VEHS +WD+F I+GG +KY+SPGN++VE DASSASYFL           VE CGT
Sbjct: 457 RFGVSVEHSSTWDQFLIQGGKKKYKSPGNAFVEDDASSASYFLASAAVTGETIIVEDCGT 516

Query: 345 SSLQGDV 351
           +SLQG+V
Sbjct: 517 NSLQGNV 523