Jatropha Genome Database

JcCB0097441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0097441.10 - phase: 2 /pseudo/partial
         (229 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023723001 assembled CDS                                       197   4e-51

>GSVIVT01023723001 assembled CDS
          Length = 626

 Score =  197 bits (501), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 105/127 (82%)

Query: 76  GDYYGTHKWHWYFSQGFSAMLFTFLPFAIAGSIKSKCWKLSGLIAWVLIVYSILGHKEFR 135
           GDYYGTHKWHWYF+QGF  MLFTFLPF+IAG + SK WK SGLIAWVL +YS+LGHKEFR
Sbjct: 368 GDYYGTHKWHWYFTQGFPVMLFTFLPFSIAGMVLSKQWKPSGLIAWVLGLYSVLGHKEFR 427

Query: 136 FVLPVLPVALIFSGYALSVMARPDSPNGDRKGSSKSHNKCLSKVGFAVIFLLCTNIPMAL 195
           FVLPVLP+AL+FSGY+++ M   DS N  RKGSS SH KC SKV  A+ FLL TNIPMAL
Sbjct: 428 FVLPVLPLALMFSGYSIAAMKTADSSNSKRKGSSNSHVKCPSKVRLAIFFLLSTNIPMAL 487

Query: 196 YMSLVHQ 202
           YMSL HQ
Sbjct: 488 YMSLFHQ 494