Jatropha Genome Database

JcCB0097241.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0097241.20 - phase: 2 /partial
         (441 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019684001 assembled CDS                                       600   e-172
GSVIVT01018120001 assembled CDS                                       370   e-103
GSVIVT01029461001 assembled CDS                                       134   6e-32

>GSVIVT01019684001 assembled CDS
          Length = 384

 Score =  600 bits (1546), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 290/361 (80%), Positives = 313/361 (86%), Gaps = 3/361 (0%)

Query: 82  PSPASSSIPTLNSLKFQLPSCISWIADDGIQKXXXXXXXXXXXXXXXKQSQKESSGIVNE 141
           PS  S+SIP LNSLK QLPSCISWI DDGI K                Q + E+S +V E
Sbjct: 26  PSSVSASIPCLNSLKLQLPSCISWIGDDGIDKSLMAPTGDSDCSP--SQLKAENSVVVAE 83

Query: 142 DDLEHLCKLVEEKDGGPAWIQMMDRSTPTMSYKAWRRDPENGPPQYRSSTVFEDATPEMV 201
           DDLEHLC+LVE KDGGPAWIQMMDRSTPTMSYKAWRRDP+ GPPQYRSST+FEDATPE+V
Sbjct: 84  DDLEHLCQLVEVKDGGPAWIQMMDRSTPTMSYKAWRRDPDTGPPQYRSSTIFEDATPELV 143

Query: 202 RDFFWDDEFRMKWDDMLIHAATLEECPTTGTMIVQWVRKFPFFCSDREYIIGRRIWESGR 261
           RDFFWDD FR+KWDDMLI+AATLEECPTTGTM+V WVRKFPFFCSDREY+IGRRIWESGR
Sbjct: 144 RDFFWDDGFRLKWDDMLIYAATLEECPTTGTMLVHWVRKFPFFCSDREYMIGRRIWESGR 203

Query: 262 LYYCVTKGVPCMSVPRRNKPRRVDLYYSSWCVRAVESKRGDGQLTACEVLLFHHEDMGIP 321
            YYCVTKGVPC SVPRRNKPRRVDLYYSSWC+RAVESKRGDGQLTACEVLLFHHEDMGIP
Sbjct: 204 SYYCVTKGVPCSSVPRRNKPRRVDLYYSSWCIRAVESKRGDGQLTACEVLLFHHEDMGIP 263

Query: 322 WEIAKLGVRQGMWGAVKKIEPGLRAYQKQRAAGDPLSRCAFMAQINTKVSADYLRSLESN 381
           WEIAKLGVRQGMWGAVKK++PGLRAYQK+R +G  LSR AFMAQINTKVSADYLRSLES 
Sbjct: 264 WEIAKLGVRQGMWGAVKKVDPGLRAYQKERGSGAALSRYAFMAQINTKVSADYLRSLEST 323

Query: 382 ANSSLEAATQDSSKKS-GGNIPRMLVLGGAIALACTLDRGLLTKAVIFGVARRFAKIGRR 440
            N S E  T  SS+K  G NIP++LV+GGAIALAC+LDRGLLTKAVIFGVAR FA+IGRR
Sbjct: 324 NNDSSEVETFGSSEKPMGRNIPKLLVVGGAIALACSLDRGLLTKAVIFGVARSFARIGRR 383

Query: 441 L 441
           L
Sbjct: 384 L 384


>GSVIVT01018120001 assembled CDS
          Length = 404

 Score =  370 bits (951), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/301 (59%), Positives = 220/301 (73%), Gaps = 3/301 (0%)

Query: 138 IVNEDDLEHLCKLVEEKDGGPAWIQMMDRSTPTMSYKAWRRDPENGPPQYRSSTVFEDAT 197
           IV E+DL+HL  ++E KDG  AW  MM+RSTP MSY+AWR +PENGP  YRS TVFEDAT
Sbjct: 104 IVTENDLDHLLHVLERKDGEMAWQGMMERSTPNMSYQAWRHEPENGPTVYRSRTVFEDAT 163

Query: 198 PEMVRDFFWDDEFRMKWDDMLIHAATLEECPTTGTMIVQWVRKFPFFCSDREYIIGRRIW 257
           PE+VRDFFWDDEFR KWD ML +   LEE P T TMIV W++KFPFFCSDREYIIGRRIW
Sbjct: 164 PEVVRDFFWDDEFRPKWDPMLAYFKILEEFPHTATMIVHWIKKFPFFCSDREYIIGRRIW 223

Query: 258 ESGRLYYCVTKGVPCMSVPRRNKPRRVDLYYSSWCVRAVESKRGDGQLTACEVLLFHHED 317
           E+G+ YYCVTKGVP   +P+R+KPRRV+LY+SSW +RAVES +G+G ++ACEV L H+ED
Sbjct: 224 EAGKTYYCVTKGVPYPGLPKRDKPRRVELYFSSWIIRAVESSKGEG-MSACEVSLVHYED 282

Query: 318 MGIPWEIAKLGVRQGMWGAVKKIEPGLRAYQKQRAAGDPLSRCAFMAQINTKVSADYLR- 376
           MGIP ++AKLGVR GMWG VKK+  G+RAYQ  R    PLSR A MA+I TK+S D    
Sbjct: 283 MGIPKDVAKLGVRHGMWGTVKKLHSGMRAYQNARKTEAPLSRSALMARITTKISFDETSD 342

Query: 377 SLESNANSSLEAATQDSSKKSGGNIP-RMLVLGGAIALACTLDRGLLTKAVIFGVARRFA 435
           SLE  +    +    D  +K    I  + +V+GG +AL C L  G + KA++ G  +RF 
Sbjct: 343 SLEPASGEEEKGQVVDIQRKKDKGIDWKWIVIGGTVALVCGLHTGTIGKALLIGAGQRFR 402

Query: 436 K 436
           +
Sbjct: 403 R 403


>GSVIVT01029461001 assembled CDS
          Length = 355

 Score =  134 bits (338), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 148/291 (50%), Gaps = 15/291 (5%)

Query: 136 SGIVNEDDLEHLCKLVEEK-DGGPAWIQMMDRSTPTMSYKAWRRDPENGPPQYRSSTVFE 194
           S IV + DL+ L   ++EK +    W  ++D+    +SY A    P++GP +Y S TVFE
Sbjct: 44  SEIVGDADLKTLIDNLDEKLNLNERWDNVVDKRNNFVSYNAKCCKPKDGPLKYVSVTVFE 103

Query: 195 DATPEMVRDFFWDDEFRMKWDDMLIHAATLEECPTTGTMIVQWVRKFPFFCSDREYIIGR 254
           + + EM+RDF+ D ++R +WD M++    L+   + GT I + ++K P   + REY++  
Sbjct: 104 NCSTEMLRDFYMDSDYRKQWDKMVLEHEQLQVDESNGTEIGRTIKKLPLL-TPREYVLAW 162

Query: 255 RIWE-SGRLYYCVTKGVPCMSVPRRNKPRRVDLYYSSWCVRAVESKRGDGQLTACEVLLF 313
           R+WE   + +YC  K        R+ +  RV  + S W +R V  +       ACE+ + 
Sbjct: 163 RLWEGKDKTFYCFIKECEHPLASRQKRYVRVSFFRSGWRIRKVPGR------NACEIKMV 216

Query: 314 HHEDMGIPWEIAKLGVRQGMWGAVKKIEPGLRAYQ--KQRAAGDPLSRCAFMAQINTKVS 371
           H ED G+  E+AKL   +G+W  V K++  LR Y        G  +S    + ++   + 
Sbjct: 217 HQEDAGLNVEMAKLAFAKGIWSYVCKMDNALRKYSAIHNSQQGSAVSAITLIQKVPPGL- 275

Query: 372 ADYLRSLESNANSSLEAATQDSSKKSGGNIP-RMLVLGGAIALAC-TLDRG 420
            + + S ES+++    AA+   +K+     P + LV  G + L    L RG
Sbjct: 276 -ETINSRESSSHLETSAASGQGNKRKFSRRPSKKLVANGLLLLGVFCLSRG 325