Jatropha Genome Database

JcCB0096691.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0096691.20 - phase: 0 
         (377 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009299001 assembled CDS                                       182   2e-46
GSVIVT01007165001 assembled CDS                                       177   6e-45
GSVIVT01038629001 assembled CDS                                       124   5e-29
GSVIVT01019913001 assembled CDS                                       122   2e-28
GSVIVT01015095001 assembled CDS                                       121   5e-28
GSVIVT01016762001 assembled CDS                                       120   8e-28
GSVIVT01024326001 assembled CDS                                       119   2e-27
GSVIVT01033800001 assembled CDS                                       112   3e-25
GSVIVT01027535001 assembled CDS                                        94   1e-19
GSVIVT01019667001 assembled CDS                                        89   3e-18
GSVIVT01003670001 assembled CDS                                        50   2e-06

>GSVIVT01009299001 assembled CDS
          Length = 475

 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 99/186 (53%), Positives = 118/186 (63%), Gaps = 21/186 (11%)

Query: 77  LMERSGQSYTAFPYYR--SASYSRSIDYGRENLNG---------VTVAFTASQRMELKQQ 125
            MERS Q+   FPYY   S++Y+R+  Y   NLNG         V   FT SQ MEL+ Q
Sbjct: 13  FMERSSQN-AIFPYYHHTSSAYNRNTGYSSGNLNGGSMHGVMAGVRGPFTQSQWMELEHQ 71

Query: 126 ALIYKYISASVPVPDNLLIPLKSNLRPHPYGLSAPSAGFFPSNSLGWSSLRLGYMGSSTS 185
           ALIYKYI+A+VP+P NLL+P++  L     G S  SAG    N+LGW S  LG+   S +
Sbjct: 72  ALIYKYITANVPIPSNLLMPIRKAL--DSVGFSTFSAGALRPNTLGWGSFHLGF---SNN 126

Query: 186 RDSEPGRCRRTDGKKWRCSRDTVADQKYCEKHMNRGRYRSRKPVEAQXXXX----XXXXX 241
            D EPGRCRRTDGKKWRCSRD VADQKYCE+HMNRGR+RSRKPVE Q             
Sbjct: 127 TDPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEGQTGHSVPGPTTTAT 186

Query: 242 XIMPVT 247
            +MP+T
Sbjct: 187 KLMPIT 192


>GSVIVT01007165001 assembled CDS
          Length = 558

 Score =  177 bits (450), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 119/170 (70%), Gaps = 15/170 (8%)

Query: 73  GDDGLMERSGQSYTAFPYYRS--ASYSRSIDYGRENLN--------GVTVAFTASQRMEL 122
           G DG +   G   TAFPYY+   ++Y+R+  +G  +LN        GV   FT SQ +EL
Sbjct: 116 GKDGRLVDRGAKTTAFPYYQPTPSAYNRNAGFGSGSLNTSMHGAFAGVRGPFTPSQWIEL 175

Query: 123 KQQALIYKYISASVPVPDNLLIPLKSNLRPHPYGLSAPSAGFFPSNSLGWSSLRLGYMGS 182
           + QALIYKYI+A+VPVP NLLIP++ +L  +P+GLS  S+     NSL W S  LG+ G+
Sbjct: 176 EHQALIYKYITANVPVPSNLLIPIRKSL--NPFGLSGSSSTSLAHNSLSWGSFHLGFSGN 233

Query: 183 STSRDSEPGRCRRTDGKKWRCSRDTVADQKYCEKHMNRGRYRSRKPVEAQ 232
           +   D EPGRCRRTDGKKWRCSRD VADQKYCE+H+NRGR+RSRKPVE Q
Sbjct: 234 T---DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEGQ 280


>GSVIVT01038629001 assembled CDS
          Length = 603

 Score =  124 bits (312), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 81/119 (68%), Gaps = 11/119 (9%)

Query: 114 FTASQRMELKQQALIYKYISASVPVPDNLLIPLKSNLRPHPYGLSAPSAGFFPSNSLGWS 173
           FT++Q  EL++QA+IYKYI ASVPVP  LL+P+  N     +  SA S    P ++LG  
Sbjct: 129 FTSAQWKELERQAMIYKYIMASVPVPPELLMPITRN-----FSESAAS----PHSTLGRG 179

Query: 174 SLRLGYMGSSTSRDSEPGRCRRTDGKKWRCSRDTVADQKYCEKHMNRGRYRSRKPVEAQ 232
           S+    +  S   D EPGRCRRTDGKKWRCSRD   +QKYCE+HM+RGR RSRKPVE  
Sbjct: 180 SIF--NLRFSNGADPEPGRCRRTDGKKWRCSRDVALNQKYCERHMHRGRPRSRKPVEVH 236


>GSVIVT01019913001 assembled CDS
          Length = 212

 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 84/131 (64%), Gaps = 6/131 (4%)

Query: 103 GRENLNGVT--VAFTASQRMELKQQALIYKYISASVPVPDNLLIPLKSNLRPHPYGLSAP 160
           G  ++ G T    FT  Q  EL+ QALIYKY+ A +PVP +L+ P+  ++     GL+A 
Sbjct: 28  GSGDMLGCTKSCGFTFLQLQELEHQALIYKYMEAGLPVPYHLVYPIWKSVACSLVGLTAG 87

Query: 161 SAGFFPSNSLGWSSLRLGYMGSSTSRDSEPGRCRRTDGKKWRCSRDTVADQKYCEKHMNR 220
           +    P   LG S L L Y     S D EPGRCRRTDGKKWRCS++ V DQKYCE+HM+R
Sbjct: 88  AYQHHP-GFLGLSPLYLDY---KNSMDPEPGRCRRTDGKKWRCSKEAVPDQKYCERHMHR 143

Query: 221 GRYRSRKPVEA 231
           GR RSRK VEA
Sbjct: 144 GRQRSRKHVEA 154


>GSVIVT01015095001 assembled CDS
          Length = 387

 Score =  121 bits (303), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/121 (47%), Positives = 82/121 (67%), Gaps = 11/121 (9%)

Query: 114 FTASQRMELKQQALIYKYISASVPVPDNLLIPLKSNLRPHPYGLSAPSAGFFP---SNSL 170
           FTA+Q  EL+ QALI+KY+++ +P+P +L+  +K +L         P++  FP   S  +
Sbjct: 10  FTATQWQELEHQALIFKYMASGMPIPPDLIFSIKRSL-----DSPLPTSKLFPTHQSQHI 64

Query: 171 GWSSLRLGYMGSSTSRDSEPGRCRRTDGKKWRCSRDTVADQKYCEKHMNRGRYRSRKPVE 230
           GW+  ++G +G     D EPGRCRRTDGKKWRC+++   D KYCE+HM+RGR RSRKPVE
Sbjct: 65  GWNCFQMG-LGRKV--DPEPGRCRRTDGKKWRCAKEAYPDSKYCERHMHRGRNRSRKPVE 121

Query: 231 A 231
            
Sbjct: 122 V 122


>GSVIVT01016762001 assembled CDS
          Length = 363

 Score =  120 bits (302), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 79/118 (66%), Gaps = 9/118 (7%)

Query: 114 FTASQRMELKQQALIYKYISASVPVPDNLLIPLKSNLRPHPYGLSAPSAGFFPSNSLGWS 173
           FTASQ  EL+ QALI+KYI + VP+P +L+  +K +L       S+ S+  FP   +GW 
Sbjct: 11  FTASQWQELEHQALIFKYIVSGVPIPADLICTVKRSL------DSSLSSRLFPHQPIGWG 64

Query: 174 SLRLGYMGSSTSRDSEPGRCRRTDGKKWRCSRDTVADQKYCEKHMNRGRYRSRKPVEA 231
             ++G+       D EPGRCRRTDGKKWRCS++   D KYCE+HM+RG+ RSRKPVE 
Sbjct: 65  CFQMGF---GRKADPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEV 119


>GSVIVT01024326001 assembled CDS
          Length = 373

 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 78/117 (66%), Gaps = 13/117 (11%)

Query: 114 FTASQRMELKQQALIYKYISASVPVPDNLLIPLKSNLRPHPYGLSAPSAGFFPSNSLGWS 173
           FT SQ  EL+ QALI+KY+ A +PVP +L++P++ +         + S+ FF   ++G+ 
Sbjct: 67  FTVSQWQELEHQALIFKYLMAGLPVPPDLVLPIQKSFE-------SMSSRFFHHPTMGYC 119

Query: 174 SLRLGYMGSSTSRDSEPGRCRRTDGKKWRCSRDTVADQKYCEKHMNRGRYRSRKPVE 230
           S    + G     D EPGRCRRTDGKKWRCS+D   D KYCE+HM+RGR RSRKPVE
Sbjct: 120 S----FYGKKV--DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVE 170


>GSVIVT01033800001 assembled CDS
          Length = 391

 Score =  112 bits (280), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/118 (51%), Positives = 77/118 (65%), Gaps = 5/118 (4%)

Query: 114 FTASQRMELKQQALIYKYISASVPVPDNLLIPLKSNLRPHP-YGLSAPSAGFFPSNSLGW 172
           F+ +Q  EL+ QALI++++ A   VP  LL  +K +L  HP Y L  P   +        
Sbjct: 50  FSLAQWQELELQALIFRHMLAGAAVPPELLQLIKKSLLNHPPYYLQHPLQHY---QHYQP 106

Query: 173 SSLRLGYMGSSTSRDSEPGRCRRTDGKKWRCSRDTVADQKYCEKHMNRGRYRSRKPVE 230
           + L+ GY G + + D EPGRCRRTDGKKWRCSRD V  QKYCE+HM+RGR RSRKPVE
Sbjct: 107 ALLQSGYWGRA-AMDPEPGRCRRTDGKKWRCSRDVVTGQKYCERHMHRGRNRSRKPVE 163


>GSVIVT01027535001 assembled CDS
          Length = 402

 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/101 (49%), Positives = 64/101 (63%), Gaps = 10/101 (9%)

Query: 134 ASVPVPDNLLIPLKSNLRPHPYGLSAPSAGFF---PSNSLGWSSLRLGYMGSSTSRDSEP 190
           A +PVP +L++P+  ++        +   G +   PS  +G+S     Y       D EP
Sbjct: 3   AGLPVPVHLVLPIWKSV---ASSFGSTDGGIYKQYPS-FIGFSPQGFDYRNV---MDPEP 55

Query: 191 GRCRRTDGKKWRCSRDTVADQKYCEKHMNRGRYRSRKPVEA 231
           GRCRRTDGKKWRCS+D V DQKYCE+HM+RGR RSRKPVEA
Sbjct: 56  GRCRRTDGKKWRCSKDVVPDQKYCERHMHRGRQRSRKPVEA 96



 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 37/52 (71%), Gaps = 7/52 (13%)

Query: 177 LGYMGSSTS-------RDSEPGRCRRTDGKKWRCSRDTVADQKYCEKHMNRG 221
           L  MG S+S        + EPGRCRRTDGKKWRCSRD V DQKYC +HM+RG
Sbjct: 281 LQVMGCSSSCFDYRNYAEPEPGRCRRTDGKKWRCSRDVVPDQKYCVRHMHRG 332


>GSVIVT01019667001 assembled CDS
          Length = 352

 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 60/97 (61%), Gaps = 16/97 (16%)

Query: 134 ASVPVPDNLLIPLKSNLRPHPYGLSAPSAGFFPSNSLGWSSLRLGYMGSSTSRDSEPGRC 193
           ASVP+P  LLIP+  +L      ++A  +           SL L +  SS   D EP RC
Sbjct: 2   ASVPIPPELLIPISRSLS----DVTASHSN---------RSLDLRFPNSS---DPEPWRC 45

Query: 194 RRTDGKKWRCSRDTVADQKYCEKHMNRGRYRSRKPVE 230
           RRTDGKKWRCSRD   DQKYCE+H ++GR RSRKPVE
Sbjct: 46  RRTDGKKWRCSRDVAPDQKYCERHTHKGRPRSRKPVE 82


>GSVIVT01003670001 assembled CDS
          Length = 420

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 27/36 (75%)

Query: 192 RCRRTDGKKWRCSRDTVADQKYCEKHMNRGRYRSRK 227
           RC+RTDG++WRC+R  + ++K CE H  +GR+R  K
Sbjct: 12  RCKRTDGRQWRCTRRVMENKKLCELHYLQGRHRQNK 47