Jatropha Genome Database

JcCB0096691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0096691.10 - phase: 1 /pseudo/partial
         (114 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009299001 assembled CDS                                        47   2e-06
GSVIVT01007165001 assembled CDS                                        47   2e-06

>GSVIVT01009299001 assembled CDS
          Length = 475

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 24/31 (77%)

Query: 1   YIGSSSSRDSEPERFRRTDGKKWRCSRDTVC 31
           ++G S++ D EP R RRTDGKKWRCSRD V 
Sbjct: 120 HLGFSNNTDPEPGRCRRTDGKKWRCSRDAVA 150


>GSVIVT01007165001 assembled CDS
          Length = 558

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 23/31 (74%)

Query: 1   YIGSSSSRDSEPERFRRTDGKKWRCSRDTVC 31
           ++G S + D EP R RRTDGKKWRCSRD V 
Sbjct: 227 HLGFSGNTDPEPGRCRRTDGKKWRCSRDAVA 257