Jatropha Genome Database
- JcCB0096461.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0096461.10 - phase: 2 /partial
(342 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01009485001 assembled CDS 132 3e-31
GSVIVT01031730001 assembled CDS 73 2e-13
GSVIVT01008961001 assembled CDS 63 2e-10
GSVIVT01001940001 assembled CDS 62 5e-10
GSVIVT01033832001 assembled CDS 61 8e-10
GSVIVT01036137001 assembled CDS 58 5e-09
GSVIVT01009970001 assembled CDS 57 2e-08
GSVIVT01037434001 assembled CDS 54 8e-08
GSVIVT01029696001 assembled CDS 52 3e-07
GSVIVT01033216001 assembled CDS 50 1e-06
GSVIVT01034540001 assembled CDS 49 3e-06
GSVIVT01023089001 assembled CDS 49 4e-06
>GSVIVT01009485001 assembled CDS
Length = 263
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 102/200 (51%), Positives = 119/200 (59%), Gaps = 26/200 (13%)
Query: 167 LFPKPTNLAF----ADVRLANGAQLA--SPGIRSSVAGIADTNIKNNLV-----HGGGMR 215
L KP N F A++ NG +A GIR+ + GI+D+ I NLV HGGGM
Sbjct: 66 LAGKPNNGGFFGDLANLGNGNGLGIAFQQMGIRNGMVGISDSGINGNLVQSSVLHGGGMG 125
Query: 216 MVGLGTAGVPVATGSPANHISPDMITKGNADTPSSLSPVPNTFG---RGRKASAALDKVI 272
MVGLG G +A+GSPAN S D I K N DT SS+SPVP F RGRK S A++KVI
Sbjct: 126 MVGLGAGGATIASGSPANQ-SSDGIGKSNGDT-SSVSPVPYAFNGGIRGRKCSGAVEKVI 183
Query: 273 ERRHRRMIKNRESAARSRARKQAYTXXXXXXXXXXXXMN----------QELQRKQFLES 322
ERR RRMIKNRESAARSRARKQAYT N E+Q+ Q +E
Sbjct: 184 ERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEKNEELEKKQAEMMEMQKNQVMEM 243
Query: 323 MNRQWGSKRQCLRRTLTGPW 342
MN Q K++CLRRTLTGPW
Sbjct: 244 MNLQREVKKRCLRRTLTGPW 263
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 34/39 (87%)
Query: 18 KRQQTLGEMTLEEFLARAGVVREDTQLIGRSNNGGFFDE 56
+RQ TLGEMTLEEFL RAGVVREDTQL G+ NNGGFF +
Sbjct: 40 QRQPTLGEMTLEEFLVRAGVVREDTQLAGKPNNGGFFGD 78
>GSVIVT01031730001 assembled CDS
Length = 72
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 46/73 (63%), Gaps = 10/73 (13%)
Query: 279 MIKNRESAARSRARKQAYTXXXXXXXXXXXXMNQELQRK---------QFLESMNRQWGS 329
MIKNRESAARSRARKQAYT N+ELQ+K Q LE++ RQ G
Sbjct: 1 MIKNRESAARSRARKQAYTLELEMEVAKLKEANEELQKKQADMEVQKNQILETI-RQRGG 59
Query: 330 KRQCLRRTLTGPW 342
KR CLRRTLTGPW
Sbjct: 60 KRLCLRRTLTGPW 72
>GSVIVT01008961001 assembled CDS
Length = 281
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 74/159 (46%), Gaps = 24/159 (15%)
Query: 182 ANGAQLASPGIRSSVAGIADTNIKNNLVHGGGMRMVGLGTAGVPVATGSPANHISPDMIT 241
AQ PG+ S ++++ V G +G + ++T PA +T
Sbjct: 139 VEAAQQQQPGVLDSSFHVSES------VFEGPAIEIGYSKNQMAMSTAVPA-------VT 185
Query: 242 KGNADTPSSLSPVPNTFGRGRKASAALDKVIERRHRRMIKNRESAARSRARKQAYTXXXX 301
+ ++P ++ R R S + K IERR +RMIKNRESAARSRARKQAYT
Sbjct: 186 TSSPNSPVAVE-------RKRWFSDEMMKTIERRQKRMIKNRESAARSRARKQAYTNHLE 238
Query: 302 XXXXXXXXMNQELQRKQFLE---SMNRQWGSKRQCLRRT 337
N L R + L+ S+N G K Q LRRT
Sbjct: 239 HEVHQLKKENDLLIRLKELQMRWSLNPTPGPKYQ-LRRT 276
>GSVIVT01001940001 assembled CDS
Length = 222
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 256 NTFGRGRK---ASAALDKVIERRHRRMIKNRESAARSRARKQAYTXXXXXXXXXXXXMNQ 312
+T GRK ++K +ERR +RMIKNRESAARSRARKQAYT N+
Sbjct: 131 DTQAPGRKRVSQEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENE 190
Query: 313 ELQRKQFLESM--NRQWGSKRQCLRRTLTGPW 342
L++++ LE M + + LRRT + P+
Sbjct: 191 RLRKRKELEKMLPSAPPPEPKYQLRRTSSAPF 222
>GSVIVT01033832001 assembled CDS
Length = 353
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 259 GRGRKASAALDKVIERRHRRMIKNRESAARSRARKQAYTXXXXXXXXXXXXMNQELQ--- 315
GR R ++KV+ERR RRMIKNRESAARSRARKQAYT N LQ
Sbjct: 253 GRKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENTLLQQAL 312
Query: 316 -------RKQFLESM 323
++Q+LE +
Sbjct: 313 ADFERKRKQQYLEEL 327
>GSVIVT01036137001 assembled CDS
Length = 324
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 29/39 (74%)
Query: 259 GRGRKASAALDKVIERRHRRMIKNRESAARSRARKQAYT 297
G R L+ +ERR RRMIKNRESAARSRARKQAYT
Sbjct: 229 GEKRTTDGTLEMAVERRQRRMIKNRESAARSRARKQAYT 267
>GSVIVT01009970001 assembled CDS
Length = 193
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 273 ERRHRRMIKNRESAARSRARKQAYTXXXXXXXXXXXXMNQELQRKQ--FLESMNRQWGSK 330
+RRH+R+IKNRESAARSRARKQAYT N L+R Q F + Q K
Sbjct: 123 DRRHKRLIKNRESAARSRARKQAYTNELELEVAHLIEENARLKRLQQKFCPEASAQLP-K 181
Query: 331 RQCLRRTLTGPW 342
+ L RT T P+
Sbjct: 182 KHTLYRTSTAPF 193
>GSVIVT01037434001 assembled CDS
Length = 230
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 239 MITKGNADTPSSLSPVP------NTFGRGRKASAALDKVIERRHRRMIKNRESAARSRAR 292
++T N LSP P +T G + A+++K +ERR +R IKNRESAARSRAR
Sbjct: 119 VVTPPNFPQQMGLSPSPSVGTLSDTSIPGHERDASMEKTVERRLKRKIKNRESAARSRAR 178
Query: 293 KQAYTXXXXXXXXXXXXMNQELQRKQFLESM 323
KQAY N L++++ +E M
Sbjct: 179 KQAYHNELVSKVSRLEEENVRLKKEKEVEKM 209
>GSVIVT01029696001 assembled CDS
Length = 142
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 37/67 (55%)
Query: 259 GRGRKASAALDKVIERRHRRMIKNRESAARSRARKQAYTXXXXXXXXXXXXMNQELQRKQ 318
G+ R +DK ++R RRMIKNRESAARSR RKQAYT N L R++
Sbjct: 47 GKRRAVEEPVDKATQQRQRRMIKNRESAARSRERKQAYTVELESLVTHLEEENARLLREE 106
Query: 319 FLESMNR 325
+S R
Sbjct: 107 AEQSKER 113
>GSVIVT01033216001 assembled CDS
Length = 57
Score = 50.1 bits (118), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 268 LDKVIERRHRRMIKNRESAARSRARKQAYTXXXXXXXXXXXXMNQELQRKQ 318
++K IERR +RMIKN ESA RSRARKQAYT N+ L++++
Sbjct: 2 IEKTIERRQKRMIKNWESATRSRARKQAYTNELENKVSRLEEENERLRKRK 52
>GSVIVT01034540001 assembled CDS
Length = 165
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 259 GRGRKASAAL---DKVIERRHRRMIKNRESAARSRARKQAYTXXXXXXXXXXXXMNQELQ 315
GRG++ + L DK +++ RRMIKNRESAARSR RKQAY N++L
Sbjct: 67 GRGKRRAPVLEPLDKAAQQKQRRMIKNRESAARSRERKQAYQVELESSAVRLEEENEQLL 126
Query: 316 RKQFLESMNR 325
+++ S R
Sbjct: 127 KEKAERSKER 136
>GSVIVT01023089001 assembled CDS
Length = 57
Score = 48.9 bits (115), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 268 LDKVIERRHRRMIKNRESAARSRARKQAYTXXXXXXXXXXXXMNQELQRKQ 318
++K IERR +RMIKN ESA SRARKQAYT N+ L++++
Sbjct: 2 IEKTIERRQKRMIKNWESATHSRARKQAYTNELENKVSRLEEENERLRKRK 52