Jatropha Genome Database

JcCB0096311.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0096311.20 + phase: 0 
         (93 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034498001 assembled CDS                                        57   2e-09
GSVIVT01019691001 assembled CDS                                        57   2e-09
GSVIVT01000477001 assembled CDS                                        56   4e-09
GSVIVT01008854001 assembled CDS                                        54   1e-08
GSVIVT01021561001 assembled CDS                                        51   1e-07

>GSVIVT01034498001 assembled CDS
          Length = 614

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 2  VLKSAVELNIINIVTTATNDGLWLSPVEIAAQIPTKNPDAPVLLDRMLNTCSS 54
          +L +AVELN+  I+  A   G ++SP EIA+Q+PT+NP+AP  +DRML   +S
Sbjct: 34 ILNTAVELNLFEIIARA-GPGAYVSPSEIASQLPTQNPNAPCFMDRMLRLFAS 85



 Score = 56.6 bits (135), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 2   VLKSAVELNIINIVTTATNDGLWLSPVEIAAQIPTKNPDAPVLLDRMLNTCSS 54
           +L +AVELN+  I+  A   G ++SP EIA+Q+PT+NP+AP  +DRML   +S
Sbjct: 285 ILNTAVELNLFEIIARA-GPGAYVSPSEIASQLPTQNPNAPCFMDRMLRLFAS 336


>GSVIVT01019691001 assembled CDS
          Length = 363

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 1/54 (1%)

Query: 1  MVLKSAVELNIINIVTTATNDGLWLSPVEIAAQIPTKNPDAPVLLDRMLNTCSS 54
          MVLK+A+EL +++I+  A   G  LSP EIA+ IPT NPDAP  LDR+L   +S
Sbjct: 32 MVLKAALELGVLDIIGRA-GPGALLSPSEIASHIPTHNPDAPFALDRILRLLAS 84


>GSVIVT01000477001 assembled CDS
          Length = 334

 Score = 55.8 bits (133), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 32/42 (76%), Gaps = 1/42 (2%)

Query: 1  MVLKSAVELNIINIVTTATNDGLWLSPVEIAAQIPTKNPDAP 42
          M LKSA+ELN+I I+  A  DG  LSP EIAAQ+P +NPDAP
Sbjct: 1  MALKSALELNLIEIMAGA-GDGALLSPSEIAAQLPARNPDAP 41


>GSVIVT01008854001 assembled CDS
          Length = 334

 Score = 53.9 bits (128), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 32/42 (76%), Gaps = 1/42 (2%)

Query: 1  MVLKSAVELNIINIVTTATNDGLWLSPVEIAAQIPTKNPDAP 42
          M LKSA+ELN+I I+  A  DG +LSP EIAA +P +NPDAP
Sbjct: 1  MALKSALELNLIEILAGA-GDGAFLSPSEIAAYLPARNPDAP 41


>GSVIVT01021561001 assembled CDS
          Length = 364

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 7/72 (9%)

Query: 1  MVLKSAVELNIINIVTTATNDGLWLSPVEIAAQIPTKNPDAPVLLDRMLNT------CSS 54
          M LK+A+ELN+ NI+  A  +   LS VEI ++IPT NP+A V LDR+L T       ++
Sbjct: 22 MALKAAMELNVFNIIANAGPNA-QLSCVEIVSKIPTTNPNAAVALDRILRTLTFNSILTA 80

Query: 55 AIRPPKRMDKVK 66
          ++RP K    +K
Sbjct: 81 SLRPCKDGTTIK 92