Jatropha Genome Database

JcCB0096311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0096311.10 + phase: 0 
         (301 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008795001 assembled CDS                                       301   2e-82
GSVIVT01020232001 assembled CDS                                        67   8e-12
GSVIVT01038589001 assembled CDS                                        55   5e-08
GSVIVT01032131001 assembled CDS                                        51   7e-07
GSVIVT01012117001 assembled CDS                                        50   2e-06
GSVIVT01026529001 assembled CDS                                        48   5e-06

>GSVIVT01008795001 assembled CDS
          Length = 795

 Score =  301 bits (771), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 159/303 (52%), Positives = 196/303 (64%), Gaps = 32/303 (10%)

Query: 8   ESYFHGKLEQF--------CTCRHCGGKADGRDCLVCDSCEEMYHVSCIQPAVKEIPLKS 59
           ES  H KLEQ         C+CRHCG KADGRDCLVCDSCEE+YH+SC++PAVK IP KS
Sbjct: 511 ESDSHTKLEQLVACGVFKVCSCRHCGEKADGRDCLVCDSCEEVYHISCVEPAVKVIPHKS 570

Query: 60  WYCASCTAVGMGSPHENCVVCKRLNAPRALCNDTDDEMKYATIERTFSKFEETSNCSRDD 119
           WYC  C A  +  PHENCVVCK+LNA R L N   D++  +  E T  + EE+SNC  + 
Sbjct: 571 WYCVDCIASRL--PHENCVVCKKLNAQRTLINGVGDDI-ISMNEETDMELEESSNCITEV 627

Query: 120 FRQPPVGNKSSCVCKICGSEVENGEKVKICEHNGCPYKYYHVRCLTTNLLKSYGPRWYCS 179
             Q     K   +CKICGS++E GE +  C H  CP KYYH  CLT+  L+ YGP WYC 
Sbjct: 628 GIQQQKETKYFQLCKICGSDMEFGEHLLECGHPFCPNKYYHKSCLTSTELRMYGPCWYCP 687

Query: 180 SCLCRVCLLDRDDHQIVLCDGCDHAFHLYCLNPPRTSVPRGKWFCRQCDVKIKEIRRVKK 239
           SCLCR CL DRDD +I+LCDGCDHA+H+YC+NPPRTS+PRGKWFCR+CD  I++IR+ K 
Sbjct: 688 SCLCRACLTDRDDEKIILCDGCDHAYHIYCMNPPRTSIPRGKWFCRKCDADIQKIRKAKM 747

Query: 240 AYEKQGNRMKRKDEMGRSACENLGKKLDVNCDQESDKDRE-PMEMLVKAA--LNFEEKMP 296
            +E      K+K E                  Q  DKD E PM++L+ AA  LN +E++ 
Sbjct: 748 VFEDLERERKQKGE------------------QVIDKDEEGPMDILLNAAQTLNLQEELA 789

Query: 297 GIR 299
            IR
Sbjct: 790 AIR 792


>GSVIVT01020232001 assembled CDS
          Length = 1789

 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 32/46 (69%)

Query: 182 LCRVCLLDRDDHQIVLCDGCDHAFHLYCLNPPRTSVPRGKWFCRQC 227
           LC+VC +D+DD  ++LCD CD  +H YCLNPP   +P G W+C  C
Sbjct: 939 LCKVCGVDKDDDNVLLCDACDSEYHTYCLNPPLARIPEGNWYCPSC 984



 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 21  CRHCGGKADGRDCLVCDSCEEMYHVSCIQPAVKEIPLKSWYCASCTAV 68
           C+ CG   D  + L+CD+C+  YH  C+ P +  IP  +WYC SC A 
Sbjct: 940 CKVCGVDKDDDNVLLCDACDSEYHTYCLNPPLARIPEGNWYCPSCVAA 987


>GSVIVT01038589001 assembled CDS
          Length = 400

 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 31/56 (55%)

Query: 177 YCSSCLCRVCLLDRDDHQIVLCDGCDHAFHLYCLNPPRTSVPRGKWFCRQCDVKIK 232
           Y S  +C  C       +++LCD CD  FHL+CL P   SVP+G WFC  C  + K
Sbjct: 82  YYSDAVCEECGSGDAADELLLCDKCDRGFHLFCLRPIIVSVPKGPWFCPSCSSQKK 137


>GSVIVT01032131001 assembled CDS
          Length = 679

 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 5/116 (4%)

Query: 114 NCSRDDFRQPPVGNKSSCVCKICG-SEVENGEKV-KICEHNGCPYKYYHV--RCLTTNLL 169
           + S+D   +    +  + +C+IC   E+E  E+  K+   N C  KY+ +  +  + N  
Sbjct: 125 DTSKDIVGEEQSQSNVNVMCRICFFGEMEGSERARKMLPCNSCGKKYHRLCLKSWSQNRD 184

Query: 170 KSYGPRWYCSSC-LCRVCLLDRDDHQIVLCDGCDHAFHLYCLNPPRTSVPRGKWFC 224
             +   W C SC +C VC    D ++ + C  CD A+H YC  PP  +V  G + C
Sbjct: 185 LFHWSSWTCPSCRICEVCRRSGDPNKFMFCRRCDDAYHCYCQQPPHKNVSSGPYLC 240


>GSVIVT01012117001 assembled CDS
          Length = 1638

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 183 CRVCLLDRDDHQIVLCDGCDHAFHLYCLNPPRTSVPRGKWFCRQCDVKIKE 233
           C +C L  +   ++ CD C   +HL CLNPP   +P GKW C +C   I++
Sbjct: 78  CVICDLGGN---LLCCDSCPRTYHLQCLNPPLKRIPNGKWQCPKCFCSIEK 125


>GSVIVT01026529001 assembled CDS
          Length = 374

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 21  CRHCGGKADGRDCLVCDSCEEMYHVSCIQPAVKEIPLKSWYCASCTA 67
           C  CG      + L+CD C+  +H+SC++P V  IP+ +W C SC+ 
Sbjct: 62  CVQCGSGDHDDELLLCDKCDRGFHMSCLRPIVVRIPIGTWLCPSCSG 108