Jatropha Genome Database

JcCB0095931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0095931.10 + phase: 0 /partial
         (154 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012532001 assembled CDS                                       219   5e-58
GSVIVT01036006001 assembled CDS                                       100   4e-22

>GSVIVT01012532001 assembled CDS
          Length = 923

 Score =  219 bits (557), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 111/158 (70%), Positives = 124/158 (78%), Gaps = 4/158 (2%)

Query: 1   KNIEDSIPKAIMHFWVNHTKRELHNVFIKKLYRENLFEEMLQEPDEIATKRKHTRDKLRV 60
           KNIED++PKAIMHF VNHTKRELHNVFI+KLYRENLFEEMLQEPDE+A KRK T + LRV
Sbjct: 765 KNIEDAVPKAIMHFLVNHTKRELHNVFIRKLYRENLFEEMLQEPDEVAMKRKRTSETLRV 824

Query: 61  LQQAFRTLDELPLEAETVERGYSLG-ADTTGLPKIRGLPTXXX-XXXXXXXXXXXXXPRN 118
           LQQA RTLDELP EAETVE+GYSLG +D TGLPKI GLPT                 P+N
Sbjct: 825 LQQALRTLDELPQEAETVEKGYSLGSSDPTGLPKIHGLPTSSLYTTSGGSTQSYTASPKN 884

Query: 119 TKSRKSSHSGELQSHFYANAESNGSGQPYV--LYPTVD 154
            KSRKSSHSGELQS F+ NA+SNG G+ Y+  LYPT+D
Sbjct: 885 PKSRKSSHSGELQSPFHGNADSNGGGRSYMPGLYPTLD 922


>GSVIVT01036006001 assembled CDS
          Length = 697

 Score = 99.8 bits (247), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 65/89 (73%)

Query: 1   KNIEDSIPKAIMHFWVNHTKRELHNVFIKKLYRENLFEEMLQEPDEIATKRKHTRDKLRV 60
           KN++D +PKAIMHF VNHTKR+L N F++KLYRENLF+EML+E D++  KRK +++   V
Sbjct: 596 KNVQDFVPKAIMHFLVNHTKRDLLNAFVQKLYRENLFKEMLREQDDVILKRKRSQEMFCV 655

Query: 61  LQQAFRTLDELPLEAETVERGYSLGADTT 89
           LQQA + +DE+  E  +     S  ADTT
Sbjct: 656 LQQAIQAIDEVDSEMSSPNSNSSFSADTT 684