Jatropha Genome Database

JcCB0095581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0095581.10 + phase: 1 /partial
         (172 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025270001 assembled CDS                                       270   3e-73

>GSVIVT01025270001 assembled CDS
          Length = 222

 Score =  270 bits (689), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 128/172 (74%), Positives = 143/172 (83%)

Query: 1   RLSKTAKIDRILMCWWAFTGLTHVILEGYFAFSPEFYKEKTPFYLAEVWKEYSKGDSRYA 60
           R  KT+KIDR+LMCWWAFTGLTH ILEGYF FSPEFYK+KT  YLAEVWKEYSKGDSRYA
Sbjct: 51  RFPKTSKIDRLLMCWWAFTGLTHAILEGYFVFSPEFYKDKTACYLAEVWKEYSKGDSRYA 110

Query: 61  ARDAGIVSVEGLTAVLEGPASLLAVYAIATKKSYSYILQFAISLGQLYGTAVYFITAFLE 120
           ARDAG+++VEG+TAVLEGPASLLA+Y IATK+SYSYILQ  ISLGQLYGTAVYFIT++L+
Sbjct: 111 ARDAGVIAVEGITAVLEGPASLLALYTIATKRSYSYILQLTISLGQLYGTAVYFITSYLD 170

Query: 121 GDNFXXXXXXXXXXXXXXXXSWVVIPSIISIRCWKKICAAFEAQGQKKTKTR 172
           GDNF                 WVVIPS+I IRCWKKICAAF+ QGQ+KTK R
Sbjct: 171 GDNFAASAYYYYAYYVFANAFWVVIPSLIVIRCWKKICAAFQVQGQQKTKVR 222