Jatropha Genome Database

JcCB0095251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0095251.10 - phase: 2 /partial
         (668 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031192001 assembled CDS                                       619   e-177

>GSVIVT01031192001 assembled CDS
          Length = 884

 Score =  619 bits (1596), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 326/457 (71%), Positives = 367/457 (80%), Gaps = 1/457 (0%)

Query: 4   LKMKKSATCRMANLIGFNLDPKPESREALSRPSLLSELISKGVLSCATQEVKDLYHLLEN 63
           L+ +K    RMANLIGFNL+PK + RE LSR +LLSEL+SKGV++C TQEVKDLYHLLE+
Sbjct: 344 LENEKERNLRMANLIGFNLEPKLDGREVLSRSALLSELVSKGVMTCVTQEVKDLYHLLEH 403

Query: 64  EFLPLDLAAKVQPLLSKISKLGGKIASASSVPEVQLSQYVPALEKLATLRLLQQVSQVYQ 123
           EFLPLDLA++VQPLL+KISKLGGK++SASSV EVQLSQYVPALEKLATLRLLQQVSQVYQ
Sbjct: 404 EFLPLDLASRVQPLLAKISKLGGKLSSASSVSEVQLSQYVPALEKLATLRLLQQVSQVYQ 463

Query: 124 MMKIESLSQMIPFLDFSVVEKISVDAVKHNFLAMKVEHTKGVILFNNLGLESDGLRDHLA 183
            MKIESLS++I F DFSVVEKISVDAVKH F+AMKV+H KGVILF NLGLESD +RDHL 
Sbjct: 464 TMKIESLSKVIQFFDFSVVEKISVDAVKHGFIAMKVDHMKGVILFGNLGLESDRMRDHLT 523

Query: 184 IFAESLNKVRALIYPPAKKSSKLGEILPGLGEIVDKEHKRLLARKSIIXXXXXXXXXXXX 243
           +FAE LNK RALI+PPAKK+SKLG++L GL E VDKEHKRLLARKSII            
Sbjct: 524 VFAEFLNKARALIHPPAKKASKLGDMLSGLAETVDKEHKRLLARKSIIEKRKEEQERQLL 583

Query: 244 XXXXXXXXXXXXXXXKREEAEQKRLAAEIEQRKNXXXXXXXXXXXXXXXXXXXXDVDKRS 303
                            EEAEQKRLA+E EQRK                     + +K  
Sbjct: 584 EMEREEESKRLKLQKITEEAEQKRLASEYEQRKTQRILREIEERELEEAQALLQEAEK-R 642

Query: 304 KRKGGKKPILEGEKVTKQTIMERALSEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPL 363
            +K GKKPI EGEKVTKQ++ME ALSEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPL
Sbjct: 643 SKKKGKKPIAEGEKVTKQSLMELALSEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPL 702

Query: 364 IEAAFQRRLVEEKALNEHEQQLEIELSRQRHDGDLREKNRLSRMLENKMIFQERVMSRRQ 423
           IEAAFQ+RLVEEKA +EHEQQ EIE+SRQRHDGDLREKNRL RML+ KMIFQERVM+RRQ
Sbjct: 703 IEAAFQQRLVEEKAFHEHEQQQEIEVSRQRHDGDLREKNRLVRMLDKKMIFQERVMNRRQ 762

Query: 424 AEFDRLRTEREERINQIIQARKQEREANRKKIFYVRT 460
           AE+ RLR EREERI+QIIQ+RKQEREA RK +FY+R+
Sbjct: 763 AEYSRLRAEREERISQIIQSRKQEREAKRKMLFYLRS 799