Jatropha Genome Database

JcCB0095101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0095101.10 + phase: 0 
         (102 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014353001 assembled CDS                                        61   9e-11
GSVIVT01018666001 assembled CDS                                        52   7e-08

>GSVIVT01014353001 assembled CDS
          Length = 204

 Score = 61.2 bits (147), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 12  PTEELELAAIAISLNVRLRSSNMPLHKQERALRCARSFLDSAPNH-RPNSSDLARNRELK 70
           P  E++LAAIAISLNVRLRSS+MP   Q+ ALR +RS +D+ P+  RPN S +AR  + +
Sbjct: 92  PNLEVKLAAIAISLNVRLRSSDMPPAMQDHALRYSRSLVDAIPDATRPNPSHIARALKKE 151

Query: 71  IVSV 74
             SV
Sbjct: 152 FDSV 155


>GSVIVT01018666001 assembled CDS
          Length = 153

 Score = 51.6 bits (122), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 36/50 (72%)

Query: 15 ELELAAIAISLNVRLRSSNMPLHKQERALRCARSFLDSAPNHRPNSSDLA 64
          E++LAA+A+ LNVRLRS++M    QERA R ARS LD+  ++ P  + LA
Sbjct: 45 EVKLAAVAVDLNVRLRSADMSAAMQERAFRYARSLLDAHSDNVPTPTHLA 94