Jatropha Genome Database

JcCB0094931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0094931.10 - phase: 0 
         (140 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018326001 assembled CDS                                       244   1e-65
GSVIVT01013280001 assembled CDS                                       228   6e-61

>GSVIVT01018326001 assembled CDS
          Length = 288

 Score =  244 bits (622), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 117/135 (86%), Positives = 121/135 (89%), Gaps = 13/135 (9%)

Query: 19  GDMFTEEQNELVESAAEMLYGLIHVRYILTTKGMAAMLEKYKNYDFGRCPRVYCCGQPCL 78
           GDMFTEEQNELVESAAEMLYGLIHVRYILT+KGM+AMLEKYK+YDFGRCPRVYCCGQPCL
Sbjct: 154 GDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMSAMLEKYKSYDFGRCPRVYCCGQPCL 213

Query: 79  PVGQSDIPRSSTVKIYCPK-------------YIDGAYFGTTFPHLFLMTYGHLKPQKAA 125
           PVGQSDIPRSSTVKIYCPK              IDGAYFGTTFPHLFLMTYGHLKPQKAA
Sbjct: 214 PVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAA 273

Query: 126 QSYVPRVFGFKLHKP 140
           QSYVPRVFGFK+HKP
Sbjct: 274 QSYVPRVFGFKIHKP 288


>GSVIVT01013280001 assembled CDS
          Length = 266

 Score =  228 bits (582), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 109/135 (80%), Positives = 116/135 (85%), Gaps = 13/135 (9%)

Query: 19  GDMFTEEQNELVESAAEMLYGLIHVRYILTTKGMAAMLEKYKNYDFGRCPRVYCCGQPCL 78
           GD FTEEQNELVESAAEMLYGLIHVRYILT+KG+AAML+KYK+ DFGRCPRVYCCGQ CL
Sbjct: 132 GDSFTEEQNELVESAAEMLYGLIHVRYILTSKGLAAMLDKYKDCDFGRCPRVYCCGQACL 191

Query: 79  PVGQSDIPRSSTVKIYCPK-------------YIDGAYFGTTFPHLFLMTYGHLKPQKAA 125
           PVG SDIPRSSTV +YCPK              IDGAYFGTTFPHLFLMTYGHLKPQKA+
Sbjct: 192 PVGLSDIPRSSTVNVYCPKCEDIYYPRSKSQGDIDGAYFGTTFPHLFLMTYGHLKPQKAS 251

Query: 126 QSYVPRVFGFKLHKP 140
           QSYVPRVFGFK+HKP
Sbjct: 252 QSYVPRVFGFKMHKP 266