Jatropha Genome Database

JcCB0094911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0094911.10 - phase: 0 
         (110 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015882001 assembled CDS                                       177   6e-46
GSVIVT01012141001 assembled CDS                                       176   3e-45
GSVIVT01036734001 assembled CDS                                       164   6e-42
GSVIVT01015884001 assembled CDS                                       143   2e-35
GSVIVT01014337001 assembled CDS                                       131   6e-32
GSVIVT01035402001 assembled CDS                                       127   9e-31
GSVIVT01026252001 assembled CDS                                       126   2e-30
GSVIVT01026250001 assembled CDS                                       126   2e-30
GSVIVT01026255001 assembled CDS                                       120   2e-28
GSVIVT01036729001 assembled CDS                                       120   2e-28
GSVIVT01024696001 assembled CDS                                        97   1e-21
GSVIVT01032785001 assembled CDS                                        77   2e-15

>GSVIVT01015882001 assembled CDS
          Length = 165

 Score =  177 bits (450), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 85/110 (77%), Positives = 95/110 (86%)

Query: 1   MGLGGCISQAKFKAKTVAIMSTFFSLTTPVGIAIGIAISNGYDENSPKALIVQGVFNAAS 60
           MGLGGCI QAKFK +  AIM+ FFSLTTPVGIAIGI ISN YDENS  ALIV+G+FNAAS
Sbjct: 56  MGLGGCIVQAKFKLRAAAIMALFFSLTTPVGIAIGIGISNVYDENSSTALIVEGIFNAAS 115

Query: 61  SGILIYMSLVDLLAADFMNPRVQANGKLQLGVNFFLLFGAGCMSFLAKWA 110
           +GIL+YM+LVDLLAADFMNPR+Q NG+LQ+G N  LL GAGCMS LAKWA
Sbjct: 116 AGILVYMALVDLLAADFMNPRMQGNGRLQVGANISLLVGAGCMSLLAKWA 165


>GSVIVT01012141001 assembled CDS
          Length = 522

 Score =  176 bits (445), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 82/110 (74%), Positives = 95/110 (86%)

Query: 1   MGLGGCISQAKFKAKTVAIMSTFFSLTTPVGIAIGIAISNGYDENSPKALIVQGVFNAAS 60
           MGLGGCISQAKFK+K VA+M  FFSLTTPVGIA+G+ ISN YDENSPKAL+V+GVFN+AS
Sbjct: 413 MGLGGCISQAKFKSKAVAVMVVFFSLTTPVGIAVGMGISNIYDENSPKALVVEGVFNSAS 472

Query: 61  SGILIYMSLVDLLAADFMNPRVQANGKLQLGVNFFLLFGAGCMSFLAKWA 110
           +GILIYM+LVDL+AADFM+PR+Q N KLQ+  N  LL G  CMS LAKWA
Sbjct: 473 AGILIYMALVDLVAADFMSPRMQTNFKLQIAANILLLLGTACMSLLAKWA 522



 Score =  157 bits (397), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 77/109 (70%), Positives = 87/109 (79%)

Query: 1   MGLGGCISQAKFKAKTVAIMSTFFSLTTPVGIAIGIAISNGYDENSPKALIVQGVFNAAS 60
           MGLGGCISQAK+K K   IM  FFSLTTP GIA+G+ IS  YDENSP ALIVQGV N+AS
Sbjct: 99  MGLGGCISQAKYKIKATIIMVLFFSLTTPTGIAVGLGISKIYDENSPTALIVQGVLNSAS 158

Query: 61  SGILIYMSLVDLLAADFMNPRVQANGKLQLGVNFFLLFGAGCMSFLAKW 109
           +GILIYM+LVDLLA DFMNP++Q+N +LQLG    LL GA  MS LAKW
Sbjct: 159 AGILIYMALVDLLATDFMNPKMQSNVRLQLGAYATLLLGAASMSVLAKW 207


>GSVIVT01036734001 assembled CDS
          Length = 220

 Score =  164 bits (416), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 79/110 (71%), Positives = 92/110 (83%)

Query: 1   MGLGGCISQAKFKAKTVAIMSTFFSLTTPVGIAIGIAISNGYDENSPKALIVQGVFNAAS 60
           +GLGGCISQAKF+  T+A+M  FFS+TTPVGI +GI IS  Y EN P ALIV+GVF+AAS
Sbjct: 111 LGLGGCISQAKFRFSTMAMMVLFFSVTTPVGIVLGIGISRIYHENGPTALIVEGVFDAAS 170

Query: 61  SGILIYMSLVDLLAADFMNPRVQANGKLQLGVNFFLLFGAGCMSFLAKWA 110
           +GILIYM+LVDLLAADFMNPR+Q + +LQLG N  LL G GCMSFLAKWA
Sbjct: 171 AGILIYMALVDLLAADFMNPRLQNSLRLQLGANISLLLGTGCMSFLAKWA 220


>GSVIVT01015884001 assembled CDS
          Length = 340

 Score =  143 bits (360), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/110 (68%), Positives = 88/110 (80%)

Query: 1   MGLGGCISQAKFKAKTVAIMSTFFSLTTPVGIAIGIAISNGYDENSPKALIVQGVFNAAS 60
           MGLG CI QAKFK++   IM  FFSLTTPVGI IGI IS  YDENS  ALI++G+FNAAS
Sbjct: 231 MGLGSCIVQAKFKSRAATIMGLFFSLTTPVGIGIGIGISQVYDENSSTALIIEGIFNAAS 290

Query: 61  SGILIYMSLVDLLAADFMNPRVQANGKLQLGVNFFLLFGAGCMSFLAKWA 110
           +GILIYM+LVDLLAADFM+P++Q N  L++  N  LL GAGCMS +AKWA
Sbjct: 291 AGILIYMALVDLLAADFMSPKMQTNEMLKVMANISLLLGAGCMSLIAKWA 340


>GSVIVT01014337001 assembled CDS
          Length = 354

 Score =  131 bits (329), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 84/110 (76%)

Query: 1   MGLGGCISQAKFKAKTVAIMSTFFSLTTPVGIAIGIAISNGYDENSPKALIVQGVFNAAS 60
           MGLGGCI QA++KA+T AIM  FFS+TTP+GIA+GI +S  Y ++SP ALIV GV NA S
Sbjct: 245 MGLGGCILQAEYKARTKAIMVFFFSVTTPLGIALGIGLSKVYSDDSPTALIVVGVLNATS 304

Query: 61  SGILIYMSLVDLLAADFMNPRVQANGKLQLGVNFFLLFGAGCMSFLAKWA 110
           +G+L YM+LVDLL ADFM P++Q+N KLQ+     ++ G G MS +A WA
Sbjct: 305 AGLLNYMALVDLLGADFMGPKLQSNMKLQMWAYVAVILGVGGMSVMAIWA 354


>GSVIVT01035402001 assembled CDS
          Length = 353

 Score =  127 bits (319), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 59/108 (54%), Positives = 83/108 (76%)

Query: 3   LGGCISQAKFKAKTVAIMSTFFSLTTPVGIAIGIAISNGYDENSPKALIVQGVFNAASSG 62
           LGGCISQA+FK  +  +M+ FF++TTP GIA G AIS+ Y+ +SP+AL+++G+F+  S+G
Sbjct: 246 LGGCISQAQFKTLSTTLMACFFAITTPAGIAFGTAISSSYNPDSPRALVIEGIFDCVSAG 305

Query: 63  ILIYMSLVDLLAADFMNPRVQANGKLQLGVNFFLLFGAGCMSFLAKWA 110
           ILIYM+LVDL+AADF++ R++ N +LQ+     L  GAG MS LA WA
Sbjct: 306 ILIYMALVDLIAADFLSKRMKCNVRLQVLSYLMLFLGAGMMSALAIWA 353


>GSVIVT01026252001 assembled CDS
          Length = 348

 Score =  126 bits (317), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 83/110 (75%)

Query: 1   MGLGGCISQAKFKAKTVAIMSTFFSLTTPVGIAIGIAISNGYDENSPKALIVQGVFNAAS 60
           MGLGGCI QA++K    A M  FFS+TTP GIA+GIA+S  Y ENSP +LI  G+ NA+S
Sbjct: 239 MGLGGCILQAEYKFVKKAWMVFFFSVTTPFGIALGIALSKTYKENSPTSLISVGLLNASS 298

Query: 61  SGILIYMSLVDLLAADFMNPRVQANGKLQLGVNFFLLFGAGCMSFLAKWA 110
           +G+LIYM+LVDLL+ADFM P++Q + KLQ+     +L GAG MS +AKWA
Sbjct: 299 AGLLIYMALVDLLSADFMGPKLQGSIKLQIKSFVAVLLGAGGMSVMAKWA 348


>GSVIVT01026250001 assembled CDS
          Length = 349

 Score =  126 bits (316), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 82/110 (74%)

Query: 1   MGLGGCISQAKFKAKTVAIMSTFFSLTTPVGIAIGIAISNGYDENSPKALIVQGVFNAAS 60
           +GLGGC+ QA++KAK  AIM  FFS+TTP GIA+GI +S+ Y +NSP +LIV GV NA S
Sbjct: 240 VGLGGCLLQAEYKAKMKAIMVFFFSVTTPFGIALGIGLSHVYSDNSPASLIVVGVLNATS 299

Query: 61  SGILIYMSLVDLLAADFMNPRVQANGKLQLGVNFFLLFGAGCMSFLAKWA 110
            G+L YM+LVDLLAADFM  ++Q+N KLQ+     +L G   MS +AKWA
Sbjct: 300 GGLLNYMALVDLLAADFMGTKLQSNMKLQMWAFIAVLLGVSGMSLMAKWA 349


>GSVIVT01026255001 assembled CDS
          Length = 114

 Score =  120 bits (300), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/110 (53%), Positives = 81/110 (73%)

Query: 1   MGLGGCISQAKFKAKTVAIMSTFFSLTTPVGIAIGIAISNGYDENSPKALIVQGVFNAAS 60
           MGLGGC  QA++K     +M  FFS+TTP GIA+GIA+S  Y +NSP +LI  G+ NA+S
Sbjct: 5   MGLGGCTFQAEYKFLKKVLMVFFFSVTTPFGIALGIALSKTYKDNSPTSLITVGLLNASS 64

Query: 61  SGILIYMSLVDLLAADFMNPRVQANGKLQLGVNFFLLFGAGCMSFLAKWA 110
           +G+LI+M+LVDLL+A+FM P++Q + KLQ+     +L  AG MS +AKWA
Sbjct: 65  AGLLIHMALVDLLSAEFMGPKLQGSIKLQIKAYVEVLLRAGGMSLMAKWA 114


>GSVIVT01036729001 assembled CDS
          Length = 192

 Score =  120 bits (300), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/84 (69%), Positives = 69/84 (82%)

Query: 20  MSTFFSLTTPVGIAIGIAISNGYDENSPKALIVQGVFNAASSGILIYMSLVDLLAADFMN 79
           M  FFS+TTPVGI +GI IS  Y EN P ALIV+GVF+AAS+GILIYM+LVDLLAADFMN
Sbjct: 1   MVLFFSVTTPVGIVLGIGISRIYHENGPTALIVEGVFDAASAGILIYMALVDLLAADFMN 60

Query: 80  PRVQANGKLQLGVNFFLLFGAGCM 103
           PR+Q++ +LQLG N  LL G GC+
Sbjct: 61  PRLQSSLRLQLGANISLLLGTGCI 84


>GSVIVT01024696001 assembled CDS
          Length = 335

 Score = 97.1 bits (240), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 76/113 (67%), Gaps = 3/113 (2%)

Query: 1   MGLGGCISQAKFKAKTVAIMSTFFSLTTPVGIAIGIAI--SNGYDENSPKALIVQGVFNA 58
           +GLGGCI+QA F   T A M   F++TTP+GI +G+ I  + GYD++S  ALI++G+  +
Sbjct: 223 LGLGGCIAQAGFNFGTTAYMCFMFAVTTPMGIVLGMIIFSATGYDDSSANALIMEGLLGS 282

Query: 59  ASSGILIYMSLVDLLAADFMNPRVQANGKLQLGVNFF-LLFGAGCMSFLAKWA 110
            SSGILIYM+LVDL+A DF + ++ A+  L    +F  L  G+  MS LA WA
Sbjct: 283 LSSGILIYMALVDLIAVDFFHNKMMASAPLLKKASFIALTLGSVSMSVLALWA 335


>GSVIVT01032785001 assembled CDS
          Length = 659

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 4/111 (3%)

Query: 3   LGGCISQAKFKAKTVAIMSTFFSLTTPVGIAIGIAI--SNGYDENSPKALIVQGVFNAAS 60
           LGGC++QA     T A M   FS+T P+G+ +G+ +  + GY+  S  ALI++G+  + +
Sbjct: 419 LGGCMAQAGLNFGTTAYMCIVFSVTAPIGMVLGMILYTATGYEPRSANALIMEGISGSLA 478

Query: 61  SGILIYMSLVDLLAADFMNPRVQANGKLQLGVNFFLLFGAGC--MSFLAKW 109
           SGIL+YM+ V   A +F   +V    +  +    F LF  GC  M+FL  W
Sbjct: 479 SGILLYMAFVKFTAVEFFYSKVMMGSRPWMKKLCFFLFVVGCASMAFLIIW 529