Jatropha Genome Database

JcCB0094891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0094891.10 - phase: 0 /pseudo
         (152 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034414001 assembled CDS                                        78   2e-15

>GSVIVT01034414001 assembled CDS
          Length = 376

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 6/109 (5%)

Query: 1   MGSLSGIIQRPIXXXXXXXXXXXXTDLSEKLPSVKSVDTCSGSLQSHSPLSD-PVQEPSF 59
           MGS+SGI+QRP+            +DLS+KL  +KS +T S    +  P+ D P QE   
Sbjct: 1   MGSMSGILQRPLIAATAVAVASVSSDLSDKLQPLKSSETSS----TLKPICDSPAQESKS 56

Query: 60  SWVSHISVSRLTKLSFVNRIHVPVPSTNFL-VPNSIHKYVPSTLASPLL 107
           SWVSHIS+S+L+  SFV+R+ VPVP  N+  VPNS   + P+     LL
Sbjct: 57  SWVSHISLSKLSNFSFVSRVRVPVPHINYYPVPNSPSGFAPNLTVVVLL 105