Jatropha Genome Database

JcCB0094631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0094631.10 + phase: 1 /partial
         (158 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021313001 assembled CDS                                       218   8e-58
GSVIVT01014092001 assembled CDS                                       209   3e-55
GSVIVT01020754001 assembled CDS                                        78   1e-15
GSVIVT01021260001 assembled CDS                                        76   8e-15
GSVIVT01011634001 assembled CDS                                        62   1e-10
GSVIVT01031857001 assembled CDS                                        62   1e-10

>GSVIVT01021313001 assembled CDS
          Length = 487

 Score =  218 bits (556), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 114/158 (72%), Positives = 119/158 (75%), Gaps = 23/158 (14%)

Query: 1   VALVTSLRDGMNLVSYEFVACQDSKKGVLILSEYRGLQIPNSNSNQYGKQKFRSWKFAGA 60
           VALVTSLRDGMNLVSYEFVACQ SKKGVLILSE                       FAGA
Sbjct: 65  VALVTSLRDGMNLVSYEFVACQASKKGVLILSE-----------------------FAGA 101

Query: 61  AQSLGAGAILVNPWNITEVADSIREALTMSCEDREKRHRHNFKHVTTHTAQEWAETFVSE 120
           AQSLGAGAILVNPWNITEVA SI  AL M  ++REKRH HNF HVTTHT+QEWA TFVSE
Sbjct: 102 AQSLGAGAILVNPWNITEVAASIGYALNMPADEREKRHWHNFMHVTTHTSQEWALTFVSE 161

Query: 121 LNDTVIEAQLRTRQVPPMLPEGDAIRRYSHSNNRLLIL 158
           LNDT+ EAQLRTRQVPP+LP  DAI RY  SNNRLLIL
Sbjct: 162 LNDTIFEAQLRTRQVPPLLPTKDAIERYLQSNNRLLIL 199


>GSVIVT01014092001 assembled CDS
          Length = 880

 Score =  209 bits (533), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 110/158 (69%), Positives = 118/158 (74%), Gaps = 23/158 (14%)

Query: 1   VALVTSLRDGMNLVSYEFVACQDSKKGVLILSEYRGLQIPNSNSNQYGKQKFRSWKFAGA 60
           VALVTSLRDGMNLVSYEFVACQ+SKKGVLILSE                       FAGA
Sbjct: 455 VALVTSLRDGMNLVSYEFVACQESKKGVLILSE-----------------------FAGA 491

Query: 61  AQSLGAGAILVNPWNITEVADSIREALTMSCEDREKRHRHNFKHVTTHTAQEWAETFVSE 120
           AQSLGAGAILVNPWNITEVA SI +AL M  E+REKRH HNF+HV  HTAQEWAETFVSE
Sbjct: 492 AQSLGAGAILVNPWNITEVASSIAQALNMPPEEREKRHEHNFEHVKNHTAQEWAETFVSE 551

Query: 121 LNDTVIEAQLRTRQVPPMLPEGDAIRRYSHSNNRLLIL 158
           LNDTV+EA LR R+VPP L   +AI+ Y  SNNRLLIL
Sbjct: 552 LNDTVVEADLRKRKVPPRLTPENAIKCYLQSNNRLLIL 589


>GSVIVT01020754001 assembled CDS
          Length = 782

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 37/138 (26%)

Query: 3   LVTSLRDGMNLVSYEFVACQDS-------------KKGVLILSEYRGLQIPNSNSNQYGK 49
           +VT++RDGMNL  YE++ C+               KK +L+LSE                
Sbjct: 362 VVTAVRDGMNLTPYEYIVCRQGTDDSESSSDLSGPKKSMLVLSE---------------- 405

Query: 50  QKFRSWKFAGAAQSLGAGAILVNPWNITEVADSIREALTMSCEDREKRHRHNFKHVTTHT 109
                  F G + SL +GAI VNPWN+   A+++ EA++MS  ++  RH  +F++V+TH 
Sbjct: 406 -------FIGCSPSL-SGAIRVNPWNVEATAEAMNEAISMSQSEQLLRHEKHFRYVSTHD 457

Query: 110 AQEWAETFVSELNDTVIE 127
              W+ +F+ ++  T  E
Sbjct: 458 VAYWSRSFLQDMERTCSE 475


>GSVIVT01021260001 assembled CDS
          Length = 784

 Score = 75.9 bits (185), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 69/119 (57%), Gaps = 11/119 (9%)

Query: 3   LVTSLRDGMNLVSYEFVACQDSKKGVLILSEYRGLQIPNSNSNQYGKQKFRSWKFAGAAQ 62
           +VT++RDGMNL+ YE++    S++GV           P        K      +F G + 
Sbjct: 365 VVTAVRDGMNLIPYEYIV---SRQGVSGSESGSESSGPK-------KSMLVVSEFIGCSP 414

Query: 63  SLGAGAILVNPWNITEVADSIREALTMSCEDREKRHRHNFKHVTTHTAQEWAETFVSEL 121
           SL +GAI VNPWN+   A+++ EA++M+  +++ RH  ++++V+TH    W+++F  ++
Sbjct: 415 SL-SGAIRVNPWNVEATAEAMNEAISMADAEKQLRHEKHYRYVSTHDVAYWSKSFFQDM 472


>GSVIVT01011634001 assembled CDS
          Length = 702

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 56  KFAGAAQSLGAGAILVNPWNITEVADSIREALTMSCEDREKRHRHNFKHVTTHTAQEWAE 115
           +F G + SL +GAI VNPWNI  VAD++  AL M   +++ RH  ++++V+TH    WA 
Sbjct: 400 EFIGCSPSL-SGAIRVNPWNIDAVADAMDSALEMLEPEKQLRHEKHYRYVSTHDVGYWAR 458

Query: 116 TFVSELNDT 124
           +F+ +L  T
Sbjct: 459 SFLQDLERT 467


>GSVIVT01031857001 assembled CDS
          Length = 577

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 56  KFAGAAQSLGAGAILVNPWNITEVADSIREALTMSCEDREKRHRHNFKHVTTHTAQEWAE 115
           +F G + SL +GAI VNPWN+   A+++ EA++MS  ++  RH  +F++V+TH    W+ 
Sbjct: 384 EFIGCSPSL-SGAICVNPWNVEATAEAMNEAISMSQSEQLLRHEKHFRYVSTHDVAYWSR 442

Query: 116 TFVSELNDTVIE 127
           +F+ ++  T  E
Sbjct: 443 SFLQDMERTCSE 454