Jatropha Genome Database

JcCB0093811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0093811.10 - phase: 0 
         (442 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020837001 assembled CDS                                       180   1e-45
GSVIVT01013079001 assembled CDS                                       111   7e-25

>GSVIVT01020837001 assembled CDS
          Length = 115

 Score =  180 bits (456), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 84/113 (74%), Positives = 91/113 (80%)

Query: 330 MPSPPPTYYKNLKNRVGDVLTDDQIKECEELGILVDRDDHGTLLQIFTKPLGDRPTIFIE 389
           MPSPPPTYY+N+K R GDVLTDDQIKECEELGILVD+DD GTLLQIFTKPLGDRPTIFIE
Sbjct: 1   MPSPPPTYYRNVKKRAGDVLTDDQIKECEELGILVDKDDQGTLLQIFTKPLGDRPTIFIE 60

Query: 390 IIQRVGCMLKDEAXXXXXXXXXXXXXXXNFSELFKSIEEYEKTLEAKRIAEAA 442
           IIQR+GCM+KD+                NFSELFKSIEEYEKTL AKRI + A
Sbjct: 61  IIQRLGCMVKDDEGKVSQKGGCGGFGKGNFSELFKSIEEYEKTLGAKRIVDPA 113


>GSVIVT01013079001 assembled CDS
          Length = 67

 Score =  111 bits (277), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/61 (78%), Positives = 56/61 (91%)

Query: 341 LKNRVGDVLTDDQIKECEELGILVDRDDHGTLLQIFTKPLGDRPTIFIEIIQRVGCMLKD 400
           +K R G+VLTDDQIKECE+LGILVD+DD GTLLQI TKPL DRPTIFIE+IQR+GCM+KD
Sbjct: 1   MKKRAGNVLTDDQIKECEDLGILVDKDDQGTLLQILTKPLDDRPTIFIEMIQRLGCMVKD 60

Query: 401 E 401
           +
Sbjct: 61  D 61