Jatropha Genome Database

JcCB0091771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0091771.10 - phase: 0 /partial
         (294 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038605001 assembled CDS                                       497   e-141
GSVIVT01019637001 assembled CDS                                       495   e-140
GSVIVT01000152001 assembled CDS                                        67   9e-12

>GSVIVT01038605001 assembled CDS
          Length = 460

 Score =  497 bits (1280), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 244/290 (84%), Positives = 270/290 (93%), Gaps = 7/290 (2%)

Query: 6   HGLVAIMSGLFGNLLVDNLGLGAVAPFDAAACFLAIGMAIILSSWTENYGDPSENKDLLS 65
           +GLVAI+SGLFGNLLVDNL LG VAPFDAAACFLA+GMA+ILSSW+ENYGDPSENKDLL+
Sbjct: 175 NGLVAILSGLFGNLLVDNLSLGPVAPFDAAACFLAVGMAVILSSWSENYGDPSENKDLLT 234

Query: 66  QFKAAAVAIASGEIHEKIALLGAIQSLFEGSMYTFVFLWTPSLSPNGEEIPHGFIFATFM 125
           QFK AAVAIAS    EKIALLGAIQSLFEGSMYTFVFLWTP+LSPN EEIPHGFIFATFM
Sbjct: 235 QFKGAAVAIAS---DEKIALLGAIQSLFEGSMYTFVFLWTPALSPNEEEIPHGFIFATFM 291

Query: 126 LASMLGSSIASRLMAHSSPKVESYMQIVFVISAASLLLPVITSFLIVPTGVKGGSISFSG 185
           LASMLGSS+ASRL+A +S KVESYMQIVFVIS+ASLLLP++T+ L+ P+ VKGGSISF+G
Sbjct: 292 LASMLGSSVASRLLARASLKVESYMQIVFVISSASLLLPIVTNILVEPSKVKGGSISFAG 351

Query: 186 CVQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNVFVCIVLYNVDAFP 245
           CVQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLN+FVCIVLYNV+AFP
Sbjct: 352 CVQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCIVLYNVNAFP 411

Query: 246 IIVMFGMCSIFLFVASLLQRRLMVIAESQKSRSPDWTAMRE--MEAEPLN 293
           I VMFGMCSIFLFVAS+LQRRLMVIA+  KS++ DW +M++  MEAEPLN
Sbjct: 412 ITVMFGMCSIFLFVASILQRRLMVIAD--KSKTEDWASMKDKNMEAEPLN 459


>GSVIVT01019637001 assembled CDS
          Length = 459

 Score =  495 bits (1274), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 243/288 (84%), Positives = 263/288 (91%), Gaps = 4/288 (1%)

Query: 6   HGLVAIMSGLFGNLLVDNLGLGAVAPFDAAACFLAIGMAIILSSWTENYGDPSENKDLLS 65
           +GL+AI+SGLFGN+LVD LGLG VAPFDAAACFLAIGMAIILSSWTENYGDPSE+KDLL 
Sbjct: 175 NGLIAILSGLFGNVLVDTLGLGPVAPFDAAACFLAIGMAIILSSWTENYGDPSESKDLLM 234

Query: 66  QFKAAAVAIASGEIHEKIALLGAIQSLFEGSMYTFVFLWTPSLSPNGEEIPHGFIFATFM 125
           QFK AAVAIAS    EKIALLGAIQSLFEGSMYTFVFLWTP+LSPN EEIPHGFIFATFM
Sbjct: 235 QFKGAAVAIAS---DEKIALLGAIQSLFEGSMYTFVFLWTPALSPNEEEIPHGFIFATFM 291

Query: 126 LASMLGSSIASRLMAHSSPKVESYMQIVFVISAASLLLPVITSFLIVPTGVKGGSISFSG 185
           LASMLGSSIASRLMA SS +VESYMQIVF IS+ASLLLP + +FL+ P+ VKGGSISF G
Sbjct: 292 LASMLGSSIASRLMARSSTRVESYMQIVFTISSASLLLPTVINFLVAPSDVKGGSISFKG 351

Query: 186 CVQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNVFVCIVLYNVDAFP 245
           C+QLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLN+FVCIVLYNV+AFP
Sbjct: 352 CIQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCIVLYNVNAFP 411

Query: 246 IIVMFGMCSIFLFVASLLQRRLMVIAESQKSRSPDWTAMREMEAEPLN 293
           I VMFGMCSIFLFVA+LLQRRLM+I+ESQ+SR  DW   R+ EAE LN
Sbjct: 412 ITVMFGMCSIFLFVATLLQRRLMMISESQRSRPQDWKE-RDTEAESLN 458


>GSVIVT01000152001 assembled CDS
          Length = 448

 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 99/224 (44%), Gaps = 25/224 (11%)

Query: 11  IMSGLFGN-LLVDNLGLGAVAPFDAAACFLAIGMAIILSSWTENYGDPSENKDLLSQFKA 69
           I S L  N LL  ++    VAP  A+     I +  I   W E    P      ++ FK 
Sbjct: 194 IGSQLLANWLLGSDVKKSVVAPSIASVILAMITIIYITKCWAET---PQ-----MAVFKD 245

Query: 70  AAVAIASGEIHEK-IALLGAIQSLFEGSMYTFVFLWTPSLSPNGEEIPHGFIFATFMLAS 128
             ++  +    +K I LL   Q+    S+  F  LW P+L  +G E+  G IF   + A 
Sbjct: 246 YKMSFYTHIFCDKRIWLLACAQACIHFSIAVFWILWAPTLVADGREVHLGLIFPCLLGAR 305

Query: 129 MLGSSIASRLMA-HSSPKVESYMQIVFVISAASLLLPVITSFLIVPTGVKGGSISFSGCV 187
           MLGS+    L +  SS + E Y+   F+I     L+  + ++     GV          V
Sbjct: 306 MLGSTALPWLTSVPSSLRTEDYLVYAFIIMG---LVLYVVAYDYQEIGV---------LV 353

Query: 188 QLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLN 231
            L  FC F AC G+  PS+ ++R+ Y+P E R  +++    P N
Sbjct: 354 TL--FCLFHACAGLILPSLARLRTMYVPNELRGGMISLSLAPSN 395