Jatropha Genome Database

JcCB0091711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0091711.10 - phase: 0 /partial
         (259 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016483001 assembled CDS                                       489   e-139
GSVIVT01024874001 assembled CDS                                       486   e-138
GSVIVT01006068001 assembled CDS                                       152   2e-37
GSVIVT01020000001 assembled CDS                                        64   6e-11
GSVIVT01013672001 assembled CDS                                        61   5e-10
GSVIVT01011856001 assembled CDS                                        49   3e-06
GSVIVT01011855001 assembled CDS                                        48   4e-06
GSVIVT01031002001 assembled CDS                                        48   4e-06

>GSVIVT01016483001 assembled CDS
          Length = 273

 Score =  489 bits (1259), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 231/258 (89%), Positives = 247/258 (95%)

Query: 1   YLITHFSDFQLACLGSFFLHESVFFLSGLPFIYLERAGWLSKYKIQTKNNSPAAQEKCIT 60
           YLITHFSDFQLACLGSFFLHESVFFLSGLPFIYLER G+LSKYKIQTKNN+PAAQ KCIT
Sbjct: 11  YLITHFSDFQLACLGSFFLHESVFFLSGLPFIYLERLGYLSKYKIQTKNNTPAAQNKCIT 70

Query: 61  RLLLYHFGVNLPVMLFSYPVFRYMGMRSDLPLPSWKVVLTQIIFYFILEDFVFYWGHRIL 120
           RLLLYHFGVNLPVM+FSYPVFRYMGM+S LPLPSWKV+LTQI+FYFILEDFVFYWGHRIL
Sbjct: 71  RLLLYHFGVNLPVMIFSYPVFRYMGMQSSLPLPSWKVILTQILFYFILEDFVFYWGHRIL 130

Query: 121 HTKWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIIGPAITGPHLITLWLWMMLR 180
           HTKWLYKHVHS+HHEYATPFGLTSEYAHPAEILFLGFATI+GPAITGPHL TLWLWM++R
Sbjct: 131 HTKWLYKHVHSIHHEYATPFGLTSEYAHPAEILFLGFATILGPAITGPHLFTLWLWMVVR 190

Query: 181 VLETVEAHCGYHFPWSLSNFIPLYGGADFHDYHHRLLYTKSGNYSSTFIYMDWIFGTDKG 240
           VLETVEAHCGYHFP+SLSNFIPLYGGA+FHDYHHR+LYTKSGNYSSTF+YMDWIFGTDKG
Sbjct: 191 VLETVEAHCGYHFPFSLSNFIPLYGGANFHDYHHRVLYTKSGNYSSTFVYMDWIFGTDKG 250

Query: 241 YRKLKALKTDGVEDGSKQ 258
           YRKL+ALK    E  + Q
Sbjct: 251 YRKLQALKRYEAEASNNQ 268


>GSVIVT01024874001 assembled CDS
          Length = 271

 Score =  486 bits (1252), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 231/261 (88%), Positives = 249/261 (95%), Gaps = 2/261 (0%)

Query: 1   YLITHFSDFQLACLGSFFLHESVFFLSGLPFIYLERAGWLSKYKIQTKNNSPAAQEKCIT 60
           YL+THFSDFQLA LGSFF+HESVFFLSGLPFI+LERAGWL KYKIQ K NS AAQE+CI 
Sbjct: 11  YLVTHFSDFQLASLGSFFIHESVFFLSGLPFIFLERAGWLGKYKIQRKMNSSAAQERCIM 70

Query: 61  RLLLYHFGVNLPVMLFSYPVFRYMGMRSDLPLPSWKVVLTQIIFYFILEDFVFYWGHRIL 120
           RL+LYHFGVNLPVM+FSYP+FRYMGM+S LPLPSWKVVLTQIIFYFILEDFVFYWGHR+L
Sbjct: 71  RLILYHFGVNLPVMIFSYPLFRYMGMQSSLPLPSWKVVLTQIIFYFILEDFVFYWGHRVL 130

Query: 121 HTKWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIIGPAITGPHLITLWLWMMLR 180
           HTKWLYKHVH VHHEYATPFGLTSEYAHPAEILFLGFATI+GPAITGPHL+TLWLWM+LR
Sbjct: 131 HTKWLYKHVHCVHHEYATPFGLTSEYAHPAEILFLGFATIVGPAITGPHLMTLWLWMVLR 190

Query: 181 VLETVEAHCGYHFPWSLSNFIPLYGGADFHDYHHRLLYTKSGNYSSTFIYMDWIFGTDKG 240
           VLETVEAHCGYHFPWSLSNF+PLYGGADFHDYHHRLLYTKSGNYSSTF+YMDWIFGTDKG
Sbjct: 191 VLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKG 250

Query: 241 YRKLKALKTD--GVEDGSKQM 259
           YR+LKALK++   VE GSKQ+
Sbjct: 251 YRRLKALKSNEVEVEAGSKQI 271


>GSVIVT01006068001 assembled CDS
          Length = 221

 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 82/188 (43%), Positives = 113/188 (60%), Gaps = 4/188 (2%)

Query: 7   SDFQLACLGSFFLHESVFFLSGLPFIYLE--RAGWLSKYKIQTKNN-SPAAQEKCITRLL 63
           SD+ L C    FL   +F +  LP +++E  R+  L K+KIQ K   S A   +C   ++
Sbjct: 33  SDYFLYCHNILFLF-LIFSVVPLPLVFMELSRSSGLDKFKIQPKVRLSSADIFRCYKDVM 91

Query: 64  LYHFGVNLPVMLFSYPVFRYMGMRSDLPLPSWKVVLTQIIFYFILEDFVFYWGHRILHTK 123
              F V  P+ L SYP  + +G+R+ LPLPS   +L Q+  YF++EDF  YW HR LH K
Sbjct: 92  SMFFFVVGPLQLVSYPSIKMIGIRTSLPLPSGWEILMQLAVYFMVEDFTNYWIHRFLHCK 151

Query: 124 WLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIIGPAITGPHLITLWLWMMLRVLE 183
           W Y+ +H VHHEY  P G  + YAH AEIL LG  + +GPA+   H+IT WLW+ LR +E
Sbjct: 152 WGYEKIHRVHHEYTAPIGFAAPYAHWAEILILGIPSFLGPAMAPGHIITFWLWIALRQIE 211

Query: 184 TVEAHCGY 191
            ++ H GY
Sbjct: 212 AIDTHSGY 219


>GSVIVT01020000001 assembled CDS
          Length = 258

 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 71/153 (46%), Gaps = 11/153 (7%)

Query: 91  PLPSWKVVLTQIIFYFILEDFVFYWGHRILH-TKWLYKHVHSVHHEYATPFGLTSEYAHP 149
           P PS  V+  Q      + D   Y+ HR +H  K+LY+H+HS HH    P+   + Y HP
Sbjct: 86  PKPSLIVLARQFFIAMFVLDTWQYFMHRYMHHNKFLYRHIHSQHHRLVVPYAFGALYNHP 145

Query: 150 AEILFLGFATIIGPA----ITGPHLITLWLWMMLRVLETVEAHCGYHFPWSLSNFIPLYG 205
            E L L     IG A    ++G        +     ++TV+ HCG   P +L +      
Sbjct: 146 LEGLLL---DTIGGALSFLLSGMSPRASIFFFSFATIKTVDDHCGLWLPGNLFHLF-FRN 201

Query: 206 GADFHDYHHRLLYTKSGNYSSTFIYM-DWIFGT 237
            + +HD HH+ LY    N+S  F  M D I GT
Sbjct: 202 NSAYHDIHHQ-LYGSKYNFSQPFFVMWDKILGT 233


>GSVIVT01013672001 assembled CDS
          Length = 257

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 14/215 (6%)

Query: 40  LSKYKIQT------KNNSPAAQEKCITRLLLYHFGVNLPVMLFSYPVFRYMGMRSDLPLP 93
           L  Y++ T      KN+ P A    + + +L    V   V    + +    G    +  P
Sbjct: 35  LDNYRLHTRKEEDEKNSVPLA---SVVKGVLLQQLVQATVAHLLFVLTSKTGSSGTVIQP 91

Query: 94  SWKVVLTQIIFYFILEDFVFYWGHRILH-TKWLYKHVHSVHHEYATPFGLTSEYAHPAEI 152
           S  V + QII   ++ D   Y+ HR +H  K+LY+HVHS HH+   P+ + + Y HP E 
Sbjct: 92  SIAVQIVQIIIGMLVMDTWQYFVHRYMHQNKFLYRHVHSQHHKLVVPYAIGALYNHPLEG 151

Query: 153 LFLG-FATIIGPAITGPHLITLWLWMMLRVLETVEAHCGYHFPWSLSNFIPLYGGADFHD 211
           L L      I   ++G    T  ++    V++TV+ HCG   P ++ + +       +HD
Sbjct: 152 LLLDTVGGAISFLVSGMTARTAVIFFCFAVIKTVDDHCGLWLPGNIFHLL-FQNNTAYHD 210

Query: 212 YHHRLLYTKSGNYSSTFIYM-DWIFGTDKGYRKLK 245
            HH+    K  NYS  F  + D + GT   Y+ ++
Sbjct: 211 IHHQRQGLKY-NYSQPFFPIWDKLLGTHMPYKLVR 244


>GSVIVT01011856001 assembled CDS
          Length = 271

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 62/148 (41%), Gaps = 15/148 (10%)

Query: 95  WKVVLTQIIFYFILEDFVFYWGHRILHT-KWLYKHVHSVHHEYATPFGLTSEYA---HPA 150
           W   L  I+ Y +  +FV YW HR LH  K LYK++H  HH Y     L+       HP 
Sbjct: 122 WFAYLVYIMAYIVFVEFVTYWIHRKLHDIKPLYKYLHVQHHSYNKQHKLSPLAGMALHPL 181

Query: 151 EILFLGFATIIGPAITGPHLITLWLWMMLRVLETVEAH-CGYHFPWSLSNFIPLYGGADF 209
           + L  G    I   +   HL T         + T   H C     W      P+ GG  +
Sbjct: 182 DGLAQGAPHTIALFLVPTHLTTHLTISFFGAIWTANIHDCIDEKLW------PIMGGG-Y 234

Query: 210 HDYHHRLLYTKSGNYSSTFIYMDWIFGT 237
           H  HH    +   NY    I+MDW+FGT
Sbjct: 235 HMIHH---LSNRHNYGLYTIWMDWMFGT 259


>GSVIVT01011855001 assembled CDS
          Length = 280

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 67/151 (44%), Gaps = 21/151 (13%)

Query: 95  WKVVLTQIIFYFILEDFVFYWGHRILH-TKWLYKHVHSVHHEYATPFGLTSEYAHPAEIL 153
           W   L  I+ Y  + +F+ YW HR LH  K LYK++H+ HH Y     ++          
Sbjct: 131 WFAYLVYIMAYIAVVEFLTYWAHRKLHDIKPLYKYLHAQHHSYNKQHKISP--------- 181

Query: 154 FLGFA--TIIGPAITGPHLITLWLWMMLRVLETVEAHCGYHFPWSLSNFI-----PLYGG 206
           F G A   + G A  GPH I ++L              G  +  ++ + I     PL GG
Sbjct: 182 FAGLALHPLDGIAQGGPHEIAIFLVPTHFTTHLTVVFLGAIWSANIHDCIDEKMWPLMGG 241

Query: 207 ADFHDYHHRLLYTKSGNYSSTFIYMDWIFGT 237
             +H  HH    +   NY    I+MDW+FGT
Sbjct: 242 G-YHVIHH---LSNRHNYGLYTIWMDWMFGT 268


>GSVIVT01031002001 assembled CDS
          Length = 271

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 64/149 (42%), Gaps = 17/149 (11%)

Query: 95  WKVVLTQIIFYFILEDFVFYWGHRILH-TKWLYKHVHSVHHEYATPFGLTSEYA----HP 149
           W      +  Y +  +F  YW HR LH  K LYK++H+ HH Y     L S +A    HP
Sbjct: 122 WPAYFVNLAVYLVFVEFGIYWMHRELHDIKPLYKYLHATHHIYNKQNTL-SPFAGLAFHP 180

Query: 150 AEILFLGFATIIGPAITGPHLITLWLWMMLRVLETVEAH-CGYHFPWSLSNFIPLYGGAD 208
            + +      ++   +   H +T  L + +  + T   H C     W +        GA 
Sbjct: 181 LDGILQALPHVLALFLFRTHFLTHVLLLFIEAIWTANIHDCIDGKIWPVM-------GAA 233

Query: 209 FHDYHHRLLYTKSGNYSSTFIYMDWIFGT 237
           +H  HH    T   NY    ++MDW+FGT
Sbjct: 234 YHTIHHT---TYRHNYGHYTVWMDWMFGT 259