Jatropha Genome Database

JcCB0090461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0090461.10 - phase: 0 
         (465 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033607001 assembled CDS                                       677   0.0  
GSVIVT01011450001 assembled CDS                                       198   5e-51

>GSVIVT01033607001 assembled CDS
          Length = 466

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/417 (77%), Positives = 365/417 (87%), Gaps = 1/417 (0%)

Query: 48  LSKKFAVHCSAEKSMDVSTSALVEDVTAECLNEMDIEEPSISTILMNFENKFDPYNAMST 107
             KKF ++C  EK MDVSTSA+V+ + A+ L EM+++EPSIST+L+N+ENK DP++A+S 
Sbjct: 50  FGKKFELNCFQEKEMDVSTSAVVDGI-ADRLTEMEVKEPSISTMLINYENKSDPFDAVSP 108

Query: 108 PLYQTATFKQPSALGDGPYDYTRHGNPTRAALESXXXXXXXXXXXXCFSSGMAALAAATH 167
           PLYQTATFKQPSA  +GPYDYTR GNPTR  LES            CF+SGMAALAA TH
Sbjct: 109 PLYQTATFKQPSATENGPYDYTRSGNPTRDVLESLLARLDKADRAFCFTSGMAALAAVTH 168

Query: 168 LVGTGEEIVAGDDLYGGSDRLLSQVSPKSGIVVKRVNTTNLDEVASAIGPWTKLVWLESP 227
           L+  GEEIVAG+D+YGGSDRLLSQV+ K GIVVKRV+TTNL+EVASAIGP TKLVWLESP
Sbjct: 169 LIAPGEEIVAGEDIYGGSDRLLSQVTTKRGIVVKRVDTTNLEEVASAIGPMTKLVWLESP 228

Query: 228 TNPRQQISDIRKIAKMAHEQGALVLVDNSIMSPVLVQPLELGADIAMQSATKFISGQSDV 287
           TNPR QISDIRKI +MAH  GAL+LVDNSIMSPVL QPLELGADI M SATKFI+G SDV
Sbjct: 229 TNPRLQISDIRKITEMAHTHGALLLVDNSIMSPVLSQPLELGADIVMHSATKFIAGHSDV 288

Query: 288 MAGVLSVRGESLARDLYFLQNSEGSGLAPFDCWICLRGVKTMALRVEKQQENAQKIAEFL 347
           MAGVL+V+GESLA+DLYFLQN+EGSGLAPFDCWICLRG+KTMALRVEKQQENAQKIAEFL
Sbjct: 289 MAGVLAVKGESLAKDLYFLQNAEGSGLAPFDCWICLRGIKTMALRVEKQQENAQKIAEFL 348

Query: 348 ASHPRVEKVNYAGLSGHPGRDLHYSQAKGAGSVLSFLTGSMPLSKHVVEATKYFSITVSF 407
           +SHPRV+KVNYAGL  HPGR LHYSQAKGAGSVLSFLTGS+  SK++VE TKYFSITVSF
Sbjct: 349 SSHPRVKKVNYAGLPDHPGRSLHYSQAKGAGSVLSFLTGSLEFSKYIVETTKYFSITVSF 408

Query: 408 GSVKSLISMPCFMSHATIPAEVRQARGLAEDLVRISVGIEDVNDLIADLDHALNTGP 464
           GSVKSLISMPCFMSHA+IPA VR+ARGL EDLVRISVGIED+NDLIADLD+AL TGP
Sbjct: 409 GSVKSLISMPCFMSHASIPAAVREARGLTEDLVRISVGIEDINDLIADLDYALRTGP 465


>GSVIVT01011450001 assembled CDS
          Length = 497

 Score =  198 bits (503), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 123/371 (33%), Positives = 197/371 (53%), Gaps = 12/371 (3%)

Query: 103 NAMSTPLYQTAT--FKQPSALGD------GPYDYTRHGNPTRAALESXXXXXXXXXXXXC 154
           +A++TP+  T+   FK+ + L D        ++Y R+GNPT   LE              
Sbjct: 127 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTVI 186

Query: 155 FSSGM-AALAAATHLVGTGEEIVAGDDLYGGSDRLLSQVSPKSGIVVKRVNTTNLDEVAS 213
            +SGM A+      LV  G  +V   D Y  +   +    PK G+ V  ++  + + + S
Sbjct: 187 MASGMCASTVMLLALVPPGGHMVTTTDCYRRTRIFIETFLPKLGVEVTVIDPADTEALKS 246

Query: 214 AIGPW-TKLVWLESPTNPRQQISDIRKIAKMAHEQGALVLVDNSIMSPVLVQPLELGADI 272
           A+      L + ESPTNP  +  DI  ++++ H +GALV +D++  +P+  + L LGAD+
Sbjct: 247 ALDKNNVTLFFTESPTNPFLRCVDIELVSELCHRKGALVCIDSTFATPLNQKTLSLGADL 306

Query: 273 AMQSATKFISGQSDVMAGVLSVRGESLARDLYFLQNSEGSGLAPFDCWICLRGVKTMALR 332
            + SATK+I+G +DV+AG +S   E L   +  L +  G  L P   ++ +RG+KT+ LR
Sbjct: 307 VLHSATKYIAGHNDVIAGCIS-GSEKLVSTIRNLHHVLGGVLNPNAAYLIIRGMKTLHLR 365

Query: 333 VEKQQENAQKIAEFLASHPRVEKVNYAGLSGHPGRDLHYSQAKGAGSVLSF-LTGSMPLS 391
           V++Q   A ++A+ L +HP+V+ V Y GL  HP   +   Q  G G V+SF + G +  +
Sbjct: 366 VQQQNSTALRMAKILEAHPKVKCVYYPGLPSHPEHHIAKRQMTGFGGVVSFEVDGDLTTT 425

Query: 392 KHVVEATKYFSITVSFGSVKSLISMPCFMSHATIPAEVRQARGLAEDLVRISVGIEDVND 451
              V+A K   I  SFG  +S++  P  MS+  +    R   G+ ++LVR S G+ED  D
Sbjct: 426 IKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLNQSERAKYGIQDNLVRFSFGVEDFED 485

Query: 452 LIADLDHALNT 462
           L AD+  AL +
Sbjct: 486 LKADILQALES 496