Jatropha Genome Database

JcCB0089711.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0089711.20 - phase: 0 /TE
         (278 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037631001 assembled CDS                                       248   3e-66
GSVIVT01034745001 assembled CDS                                       234   3e-62
GSVIVT01015124001 assembled CDS                                       221   3e-58
GSVIVT01011363001 assembled CDS                                       199   1e-51
GSVIVT01038695001 assembled CDS                                       142   2e-34
GSVIVT01028612001 assembled CDS                                       103   7e-23
GSVIVT01000436001 assembled CDS                                        87   1e-17
GSVIVT01014104001 assembled CDS                                        54   6e-08
GSVIVT01036343001 assembled CDS                                        52   4e-07

>GSVIVT01037631001 assembled CDS
          Length = 1940

 Score =  248 bits (632), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 126/287 (43%), Positives = 180/287 (62%), Gaps = 21/287 (7%)

Query: 13   IFIGENYQLWTVKMKAYLQAYDLWEHVETEKEIPPLPSNPTMVQIKNHSEEKAKKFKAKT 72
            I  G+NY+ W V+M  +LQA D+WE VE   E+PPL +NPT+ Q+K H E + +K KAK 
Sbjct: 731  ILDGDNYETWAVRMTVHLQALDVWEAVEENYEVPPLGANPTVAQMKLHKERRTRKAKAKA 790

Query: 73   CLHSSISDIIFTSIMTCEIAKEIWDSLKNKYQGNEQTKLMQVLNLKREFEM*KMRTSGGV 132
            CL +++S  IF  IM  + A EIW+ LK +Y+G+E+ K MQV+NL REFEM KMR S  V
Sbjct: 791  CLFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESDAV 850

Query: 133  KEYVNNLMSNVNKIRLLGEEFPERRVVEKILISLPEKFESKISSLEDTKNIFEIFVGELT 192
            K+Y   L+S  +K+RLLG+EF   ++V+KIL++LPEK+E+ ISSLE++K++  I + EL 
Sbjct: 851  KDYAAQLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYEATISSLENSKDLSTISLTELL 910

Query: 193  NALQAVEQRRAFKEDNTIEVALVAKTTNKCLSKRIK---------------FPPCGICKK 237
            ++L+AVEQRR  ++ +T E A  A+       K  K               FPPC  CKK
Sbjct: 911  HSLEAVEQRRLMRQGDTAEGAFQARMQKNAGHKNGKVNNNKSCGNNQKNGVFPPCPHCKK 970

Query: 238  DNHDENDCWHKGKLQCFNCKKFGHIQKDCRYQNQS------NFVQEE 278
             NH    CW +  ++C  C K GH+++ C+ Q Q       ++ QEE
Sbjct: 971  TNHSPKKCWWRPDVKCNKCGKQGHVERICKNQQQEETNAVVDYCQEE 1017


>GSVIVT01034745001 assembled CDS
          Length = 2196

 Score =  234 bits (598), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 121/276 (43%), Positives = 172/276 (62%), Gaps = 21/276 (7%)

Query: 13  IFIGENYQLWTVKMKAYLQAYDLWEHVETEKEIPPLPSNPTMVQIKNHSEEKAKKFKAKT 72
           +F GE+Y +W VKM+ YL++  LW  V +E + PPL +NPT+ Q+K + EEK KK KA T
Sbjct: 13  VFNGEHYHIWAVKMRFYLRSQGLWNVVMSEADPPPLGANPTVAQMKAYEEEKLKKDKAIT 72

Query: 73  CLHSSISDIIFTSIMTCEIAKEIWDSLKNKYQGNEQTKLMQVLNLKREFEM*KMRTSGGV 132
           CLHS ++D IFT IM  E  K +WD L+ +++G+E+ K +++L LKREFE+ KM+    V
Sbjct: 73  CLHSGLTDHIFTKIMNLETPKLVWDKLQGEFEGSERFKTVRLLKLKREFELMKMKDDEFV 132

Query: 133 KEYVNNLMSNVNKIRLLGEEFPERRVVEKILISLPEKFESKISSLEDTKNIFEIFVGELT 192
           K+Y   LM  VN+IRLLGE F +++VVEKI++ +P+KFE+KIS++E++ ++  + + ELT
Sbjct: 133 KDYSGRLMDVVNQIRLLGEAFTDQKVVEKIMVLVPQKFEAKISAIEESCDLQTLTIVELT 192

Query: 193 NALQAVEQRRAFKEDNTIEVALVAKTTNK-------------------CLSKRIKFPPCG 233
           + L A EQR   + D   E A  A    K                     S++ KFP C 
Sbjct: 193 SKLHAQEQRVLMRGDEATEGAFQANHEGKNSGNLQGKKFFKNNKEKAEGSSRKGKFPSCS 252

Query: 234 ICKKDNHDENDCWHKGK--LQCFNCKKFGHIQKDCR 267
            C++ NH E DCWHKGK    C  C K GH +K CR
Sbjct: 253 HCRRTNHAEKDCWHKGKPLFNCNFCNKLGHSEKYCR 288


>GSVIVT01015124001 assembled CDS
          Length = 780

 Score =  221 bits (563), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 146/202 (72%)

Query: 10  SPPIFIGENYQLWTVKMKAYLQAYDLWEHVETEKEIPPLPSNPTMVQIKNHSEEKAKKFK 69
           +PP+F G NYQ+W V+M+AYL A DLWE V  E E+PPL  NPT+ QIK H+E + +K K
Sbjct: 11  TPPMFDGINYQVWAVRMEAYLDASDLWEAVSEEYEVPPLSDNPTIAQIKLHNERRQRKSK 70

Query: 70  AKTCLHSSISDIIFTSIMTCEIAKEIWDSLKNKYQGNEQTKLMQVLNLKREFEM*KMRTS 129
            K  L + +S  IFT IMT +   EIW+ LK +Y+GNE+ K MQVLNL REFEM +M+ S
Sbjct: 71  VKASLFAVVSSTIFTRIMTLKTTNEIWNFLKKEYEGNERVKGMQVLNLIREFEMQRMKES 130

Query: 130 GGVKEYVNNLMSNVNKIRLLGEEFPERRVVEKILISLPEKFESKISSLEDTKNIFEIFVG 189
             +K+Y + L+S VNK+RLLG +F   R+V+KI I++ EKFE+ ISSLE++K++  I + 
Sbjct: 131 ETIKDYSDKLLSIVNKVRLLGVDFSNSRIVQKIFITVSEKFENTISSLENSKDVSSITLA 190

Query: 190 ELTNALQAVEQRRAFKEDNTIE 211
           EL NALQA EQRR  +++ ++E
Sbjct: 191 ELLNALQAQEQRRLMRQEGSVE 212


>GSVIVT01011363001 assembled CDS
          Length = 1752

 Score =  199 bits (506), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 89/174 (51%), Positives = 127/174 (72%)

Query: 10  SPPIFIGENYQLWTVKMKAYLQAYDLWEHVETEKEIPPLPSNPTMVQIKNHSEEKAKKFK 69
           +P I  G+NY+ W V+M  +LQA D+WE VE   E+PPL +NPT+ Q+K H E + +K K
Sbjct: 9   APSILDGDNYETWAVRMTVHLQALDVWEAVEENYEVPPLGANPTVAQMKLHKERRTRKAK 68

Query: 70  AKTCLHSSISDIIFTSIMTCEIAKEIWDSLKNKYQGNEQTKLMQVLNLKREFEM*KMRTS 129
           AK CL +++S  IF  IM  + A EIW+ LK +Y+G+E+ K MQV+NL REFEM KMR S
Sbjct: 69  AKACLFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRES 128

Query: 130 GGVKEYVNNLMSNVNKIRLLGEEFPERRVVEKILISLPEKFESKISSLEDTKNI 183
             VK+Y   L+S  +K+RLLG+EF   ++V+KIL++LPEK+E+ ISSLE++K++
Sbjct: 129 DAVKDYAAQLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYEATISSLENSKDL 182


>GSVIVT01038695001 assembled CDS
          Length = 740

 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/188 (41%), Positives = 113/188 (60%), Gaps = 21/188 (11%)

Query: 112 MQVLNLKREFEM*KMRTSGGVKEYVNNLMSNVNKIRLLGEEFPERRVVEKILISLPEKFE 171
           MQV+NL REFEM KMR S  VK+Y   L+S  +K+RLLG+EF   ++V+KIL++LPEK+E
Sbjct: 1   MQVMNLIREFEMKKMRESDAVKDYAAQLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYE 60

Query: 172 SKISSLEDTKNIFEIFVGELTNALQAVEQRRAFKEDNTIEVALVAKTTNKCLSKRIK--- 228
           + ISSLE++K++  I + EL ++L+AVEQRR  ++ +T E A  A+       K  K   
Sbjct: 61  AIISSLENSKDLSTISLTELLHSLEAVEQRRLMRQGDTAEGAFQARMQKNAGHKNGKVNN 120

Query: 229 ------------FPPCGICKKDNHDENDCWHKGKLQCFNCKKFGHIQKDCRYQNQS---- 272
                       FPPC  CKK NH    CW +  ++C  C K G++++ C+ Q Q     
Sbjct: 121 KKSCGNNQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGNMERICKNQQQEETSA 180

Query: 273 --NFVQEE 278
             ++ QEE
Sbjct: 181 AVDYCQEE 188


>GSVIVT01028612001 assembled CDS
          Length = 3048

 Score =  103 bits (258), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 133/271 (49%), Gaps = 10/271 (3%)

Query: 8   FSSPPI--FIGENYQLWTVKMKAYLQAYDLWEHVETEKEIPPLPSNPTM--VQIKNHSEE 63
           F  P I  F G  Y  W + M+ +L++ + W  V     +P +  +  +   Q K+  ++
Sbjct: 31  FVQPAISKFDG-YYDHWAMLMENFLRSKEYWGLVVNG--VPAVAEDAVLTDAQRKHIEDQ 87

Query: 64  KAKKFKAKTCLHSSISDIIFTSIMTCEIAKEIWDSLKNKYQGNEQTKLMQVLNLKREFEM 123
           + K  KAK  L  ++   I  +I+  +  K+IWDS+K K+QG  + K   +  L++EF++
Sbjct: 88  QLKDLKAKNYLFQALDRSILETILNKKTTKDIWDSMKQKFQGTTRVKRGNLQALRKEFKI 147

Query: 124 *KMRTSGGVKEYVNNLMSNVNKIRLLGEEFPERRVVEKILISLPEKFESKISSLEDTKNI 183
             M++   V EY +  ++  NK+++ GE+     VVEKIL S+  KF+  + S+E++K++
Sbjct: 148 LHMKSGETVNEYFSRTLAIANKMKVNGEDKGNTAVVEKILRSMTSKFDYVVCSIEESKDL 207

Query: 184 FEIFVGELTNALQAVEQRRAFKEDNTIEVALVAKTTNKCLSKRIKFPPCGICKKDNHDEN 243
             + + EL ++L   EQR      + +E     K T+   S            +      
Sbjct: 208 DTLTIDELQSSLLVHEQRMT---SHVLEEEQALKVTHGDHSGSRGRGHGNYRGRGRGRNR 264

Query: 244 DCWHKGKLQCFNCKKFGHIQKDCRYQNQSNF 274
             + K  ++C+NC K GH   +C ++    +
Sbjct: 265 RFFDKATMECYNCHKLGHFAWECPHRETGAY 295


>GSVIVT01000436001 assembled CDS
          Length = 95

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 55/84 (65%)

Query: 12 PIFIGENYQLWTVKMKAYLQAYDLWEHVETEKEIPPLPSNPTMVQIKNHSEEKAKKFKAK 71
          P+F GE+Y +W  KM+ YL++  LW  V  E + PPL +NPT+ Q+K + EEK KK KA 
Sbjct: 12 PVFNGEHYHIWVDKMRFYLRSQGLWNVVMFEADPPPLGANPTVAQMKAYEEEKLKKDKAI 71

Query: 72 TCLHSSISDIIFTSIMTCEIAKEI 95
          TCLHS + D IFT IM  E  K +
Sbjct: 72 TCLHSGLVDHIFTKIMDLETPKLV 95


>GSVIVT01014104001 assembled CDS
          Length = 1354

 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 120/261 (45%), Gaps = 21/261 (8%)

Query: 13  IFIGENYQLWTVKMKAYLQAYDLWEHVETEKEIPPLPSNPTMVQIKNHSEEKAKKFKAKT 72
           IF G N+  W  + +  L   DL   + ++K  PP  ++ +  +    S+  +K  +   
Sbjct: 386 IFDGSNFSEWYERGQFSLGILDLDLALISDK--PPEATDDSTPEQVEQSKAWSKSNRLSL 443

Query: 73  C-LHSSISDIIFTSIMTCEIAKEIWDSLKNKYQGNEQTKLMQVLNLKREFEM*KMRTSG- 130
             +  +I++ I TS+   E A E   S++ +++  +++    ++      E+  M+  G 
Sbjct: 444 MFMRMTIANNIKTSLPQTEFASEFLKSVEERFKRADKSLAGTLMA-----ELTTMKYDGQ 498

Query: 131 -GVKEYVNNLMSNVNKIRLLGEEFPERRVVEKILISLPEKFESKISSLEDTKNIFEIFVG 189
            G+++++ N+     K++ LG    E  +V+ +L SLP +F      +    N  +  + 
Sbjct: 499 KGIQQHILNMTEKTAKLKALGMGMDESFLVQFVLNSLPSQFAP--FKIHYNTNSDQWNLN 556

Query: 190 ELTNALQAVEQRRAFKEDNTIEVALVAKTTNKCLSKRI--KFPPCGICKKDNHDENDCWH 247
           ELT+     E+ R  +E + + +A+    T K    +    FPP    KK    E    H
Sbjct: 557 ELTSKC-IQEEVRLRQEGHNLALAVTHGVTKKKGKFKKGRNFPP----KKSGPGEGSQNH 611

Query: 248 KGK--LQCFNCKKFGHIQKDC 266
            GK  + C+ C K GH++KDC
Sbjct: 612 DGKFTVSCYFCGKKGHVKKDC 632


>GSVIVT01036343001 assembled CDS
          Length = 1201

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 117/289 (40%), Gaps = 43/289 (14%)

Query: 17  ENYQLWTVKMKAYLQAYDLWEHVETEKEIPPLP-----SNPTMVQIKNHSEEKAKKFKAK 71
           +N+ LW  +M+  + A    +H+E  +  PP        NP  +  + +           
Sbjct: 136 DNHILWHTQMENVIYANGFEDHIEGLRPCPPKTISTGEVNPDFLVWRRYDR------MIL 189

Query: 72  TCLHSSISDIIFTSIMTCEIAKEIWDSLKNKYQGNEQTKLMQVLNLKREFEM*KMRTSGG 131
           + ++SS++  +   I+  + + E W +L+  +  + + + MQ   L+  F+  K + S  
Sbjct: 190 SWIYSSLTPDVMGQIVGLQTSHEAWTALQRSFSASTKARTMQ---LRLAFQTNK-KGSLT 245

Query: 132 VKEYVNNLMSNVNKIRLLGEEFPERRVVEKILISLPEKFESKISSLEDTKNIFEIFVGEL 191
           + EY+  L    + +  +GE  PE+  + ++L  L  ++   I+SL    +  +I +  +
Sbjct: 246 MMEYIQKLKHISDSLAAIGEPVPEKDQILQLLSGLGAEYNPIIASLTTRDD--DIQLHAV 303

Query: 192 TNALQAVEQRRAFKEDNTIEVALVA--KTTNKCLSKRIKFPPCG---------ICKKDNH 240
            + L   EQR   +   T E  L+A   T N+    + K P  G         I      
Sbjct: 304 HSILLTHEQRLPLQTTPTEEDLLIANFATHNRPRRSQSKKPSQGKPPQSFMPTIRPDTLL 363

Query: 241 DENDCWHKGKL---------------QCFNCKKFGHIQKDCRYQNQSNF 274
           D    + +G                 QC  C KFGH+   C ++   N+
Sbjct: 364 DSRQQYPQGYRPNRFNNNRSRTNNRPQCQLCGKFGHMVLSCYHRFDVNY 412