Jatropha Genome Database

JcCB0089711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0089711.10 + phase: 0 
         (69 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033084001 assembled CDS                                       106   2e-24
GSVIVT01008551001 assembled CDS                                       100   1e-22

>GSVIVT01033084001 assembled CDS
          Length = 69

 Score =  106 bits (264), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/68 (77%), Positives = 56/68 (82%)

Query: 1  MDALDSVFDPLREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
          MDA+D+VFDP+REFAKDSVRLVKRCHKPDRKEFTKVAFRTAI            KLIFIP
Sbjct: 1  MDAIDNVFDPMREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGS 68
          INNIIVGS
Sbjct: 61 INNIIVGS 68


>GSVIVT01008551001 assembled CDS
          Length = 69

 Score =  100 bits (249), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/69 (72%), Positives = 53/69 (76%)

Query: 1  MDALDSVFDPLREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
          MDA+DS  DPLREF+KDSVRLVKRCHKPDRKE+TKVAFRTA             KLIFIP
Sbjct: 1  MDAIDSAVDPLREFSKDSVRLVKRCHKPDRKEYTKVAFRTATGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSS 69
          INNIIVGS 
Sbjct: 61 INNIIVGSG 69