Jatropha Genome Database

JcCB0088661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0088661.10 + phase: 0 /partial
         (771 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012724001 assembled CDS                                       275   6e-74

>GSVIVT01012724001 assembled CDS
          Length = 1445

 Score =  275 bits (703), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 145/268 (54%), Positives = 176/268 (65%), Gaps = 43/268 (16%)

Query: 1   IFVRQKNRCSSKAPENPIKAVRWMKTSPLNAEEIECIQEGLKVFKHDWMSVWRFIVPHRD 60
           IFVRQKNRCSSKAP+NPIKAVR MKTSPL AEE E IQEGL+VFK DWMS+W+FIVPHRD
Sbjct: 618 IFVRQKNRCSSKAPDNPIKAVRRMKTSPLTAEEKERIQEGLRVFKLDWMSIWKFIVPHRD 677

Query: 61  PSLLPRQWRMALGTQRSYKSDAAKKEKRRIYESNRRRSKTA-----DLANSQQDNQVDIT 115
           PSLLPRQWR+A G Q+SYK D AKKEKRR+YE NRR+SK A     +  + +++ Q +  
Sbjct: 678 PSLLPRQWRIAHGIQKSYKKDTAKKEKRRLYELNRRKSKAAAGPIWETVSEKEEYQTENA 737

Query: 116 GGENNSGDDCVDNVNEAYVHQAFLADWRPDACFNLREKNLPSGAVLREGTRVREHSQIDN 175
             E  SGDD +DN +EAYVH+AFLADWRP+   N                          
Sbjct: 738 VEEGKSGDDDMDNDDEAYVHEAFLADWRPEGTHN-------------------------- 771

Query: 176 VHKFPNARYYQYPHAVSYFAHARHCPPNSMQLNHQLSNTTLNATKSQIYMWPYRTHRTDG 235
                       PH  S+F H R+   ++M+ +  +S+ TL ++KSQ  + PYR  R   
Sbjct: 772 ------------PHMFSHFPHVRNSTSSTMEPSQPVSDLTLKSSKSQFCLRPYRVRRNSS 819

Query: 236 AHLVKLAPDLPPVNLPPSVRVISQAAFK 263
           AH VKLAPDLPPVNLPPSVR+ISQ+A K
Sbjct: 820 AHQVKLAPDLPPVNLPPSVRIISQSALK 847



 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 113/384 (29%), Positives = 159/384 (41%), Gaps = 79/384 (20%)

Query: 398  LFHAPHQANQISDCLNKSSKTKESISASCGIDFHPLLQRTGEESSELATACSNTHQFVCL 457
            LFH PHQAN   +   KS K+KES + SCGIDFHPLLQR+ +  ++L             
Sbjct: 851  LFHNPHQANPKVNSFYKSLKSKES-TPSCGIDFHPLLQRSDDIDNDL------------- 896

Query: 458  GGKSAQFQNPSDVVQTKLPVNS-PSATASKPSGPNEKSNELDLEIHLXXXXXXXXXXGTR 516
                    N  D V T+  VNS P  + +KPS  +   NELDLEIHL          G+ 
Sbjct: 897  --------NSFDAVLTEPRVNSAPPRSGTKPSCLDGIENELDLEIHLSSTSKTEKVVGS- 947

Query: 517  DSASNYQPKLMISAPNPVNTIEKHKPNNPCHQHGENCSTVQSNLVSCGDALAVPSNSDRI 576
                                                     +NL+S   AL +PSN    
Sbjct: 948  -----------------------------------------TNLISGACALVLPSNDI-- 964

Query: 577  CNMDDVGDQSHPEIIMXXXXXXXXXXXXXXXXXXXXXXMADSDXXXXXXXXXXXXXPDKE 636
              +D++GDQS PEI+M                      MADS+              DK 
Sbjct: 965  --LDNIGDQSLPEIVMEQEELSDSDEEIGEHVEFECEEMADSEGEESSDSEQIVDLQDKV 1022

Query: 637  ITCSATEEVTT---------EWKSTIHTDGNSSIPGKASPFLKLSLTSMRKESS-SSAWL 686
            +     E++           E +   +   N  I   ++  ++L  T   +++  SS+WL
Sbjct: 1023 VPIVEMEKLVPDVDFDNEQCEPRRIDNPQSNDCITKDSTSPVRLGSTGQERDTRCSSSWL 1082

Query: 687  TLDSCAAVDPPRINAKYEECTIGACPVAKKLISGRPNRSCKKTTQSMRTVVTEKDVMDMA 746
            +L+SC    PP+  A   + +    P  K     RPNRS +KTT   + V  +K  M+M 
Sbjct: 1083 SLNSCPPGCPPQAKAHCIQSSNEEGPDMKNQEPPRPNRSSRKTTPIPKYVAAQKQPMNMP 1142

Query: 747  QQLSLGPLAVSTLKKPRKRACRTN 770
             QL    LAV  ++KPRKR+ RT+
Sbjct: 1143 PQLGQDSLAVIPVRKPRKRSGRTH 1166