Jatropha Genome Database
- JcCB0088201.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0088201.10 + phase: 1 /TE/partial
(578 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01009548001 assembled CDS 183 2e-46
GSVIVT01012382001 assembled CDS 100 3e-21
GSVIVT01000641001 assembled CDS 90 2e-18
GSVIVT01013655001 assembled CDS 69 5e-12
GSVIVT01010555001 assembled CDS 69 8e-12
GSVIVT01031724001 assembled CDS 61 2e-09
GSVIVT01028343001 assembled CDS 58 2e-08
GSVIVT01013341001 assembled CDS 54 2e-07
>GSVIVT01009548001 assembled CDS
Length = 849
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 119/169 (70%)
Query: 402 RHKDHILTYRRSTHLEVVGYSDSNYAGCVDSRKSTIGYLFLLAGGAVSWKSGKQFVIATS 461
R D +L YRR +LEVVGYS+S++ GC D KST GY+F+L GGA+SWKS KQ +IA S
Sbjct: 645 RTNDFMLVYRRVDNLEVVGYSNSDFNGCSDDCKSTSGYIFMLTGGAISWKSVKQSLIAFS 704
Query: 462 TMEAKFVACFEATVHALWLXNFVSGLGIIDSIARPLRIYCDNFGAVFFSXNDRYSKGAKQ 521
TM AKFVAC+ A+ +WL +S L ++DSI RP+ IYCDN VF+S N++ S +K
Sbjct: 705 TMYAKFVACYGASSQVVWLRKLISELQVVDSIFRPIVIYCDNNATVFYSKNNKISTSSKH 764
Query: 522 MDLKYLSVKEEVQKHKGSIEHIGIDMIIADPLTKGLPPKIFTGHVERMG 570
M++KYL VK+ V+K I+HI + ++ADPLTKGL P +F HV MG
Sbjct: 765 MEIKYLIVKDLVKKEDIVIKHIRTESMLADPLTKGLKPIMFKEHVVNMG 813
>GSVIVT01012382001 assembled CDS
Length = 952
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 93/166 (56%), Gaps = 2/166 (1%)
Query: 408 LTYRRSTHLEVVGYSDSNYAGCVDSRKSTIGYLFLLAGGAVSWKSGKQFVIATSTMEAKF 467
+ RR+ H +++G+SDS++AG R+ST GY + G VSWKS KQ V+A S+ EA++
Sbjct: 784 IVMRRNGHTDIIGFSDSDWAGNTIDRRSTTGYCMFVGGNLVSWKSKKQPVVARSSAEAEY 843
Query: 468 VACFEATVHALWLXNFVSGLGIIDSIARPLRIYCDNFGAVFFSXNDRYSKGAKQMDLKYL 527
A A+ +WL N ++ LG S P++++CDN A+ + N + + K +++
Sbjct: 844 RAMAAASCEMVWLKNLLTDLGF--SPTSPMKLFCDNQAAMHIAANPVFHERTKHIEVDCH 901
Query: 528 SVKEEVQKHKGSIEHIGIDMIIADPLTKGLPPKIFTGHVERMGVVD 573
++++VQ +I +AD TK L +F + ++G +D
Sbjct: 902 FIRQQVQSKVIQTHYIRSSDQLADAFTKVLSSTVFHRLMFKLGSID 947
>GSVIVT01000641001 assembled CDS
Length = 947
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 85/159 (53%), Gaps = 2/159 (1%)
Query: 404 KDHILTYRRSTHLEVVGYSDSNYAGCVDSRKSTIGYLFLLAGGAVSWKSGKQFVIATSTM 463
KD L Y++ +++G++DS+YAG D+R+ST GY+F+L GAVSW S KQ ++ ST
Sbjct: 286 KDFGLFYKKGKRSDLIGFTDSDYAGDQDNRRSTSGYVFMLGTGAVSWSSKKQPIVTLSTT 345
Query: 464 EAKFVACFEATVHALWLXNFVSGLGIIDSIARPLRIYCDNFGAVFFSXNDRYSKGAKQMD 523
EA+FVA A+WL + L + A I+CDN + S N +K +D
Sbjct: 346 EAEFVAATVCACQAIWLRKILEELHLKQVGAT--TIFCDNSSTIKLSKNPVLHGRSKHID 403
Query: 524 LKYLSVKEEVQKHKGSIEHIGIDMIIADPLTKGLPPKIF 562
+KY +++ + + + +AD TK L +F
Sbjct: 404 VKYYFLRDLSNDGVIDLVYCRSENQVADIFTKPLKLAVF 442
>GSVIVT01013655001 assembled CDS
Length = 4396
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 405 DHILTYRRSTHLEVVGYSDSNYAGCVDSRKSTIGYLFLLAGGAVSWKSGKQFVIATSTME 464
DH +T RR++ L + +SDS++AG D ST Y+ L +SW S KQ +A S+ E
Sbjct: 4285 DHGITLRRTSPLALHAFSDSDWAGNKDDFTSTSAYIIYLGHNPISWSSKKQRTVARSSTE 4344
Query: 465 AKFVACFEATVHALWLXNFVSGLGIIDSIARPLRIYCDNFGAVFF 509
A++ + W+ + ++ LG+ ++ + IYCDN GA
Sbjct: 4345 AEYRSVASTAAEIRWICSLLTELGV--TLPQQPVIYCDNVGATHL 4387
>GSVIVT01010555001 assembled CDS
Length = 147
Score = 68.6 bits (166), Expect = 8e-12, Method: Composition-based stats.
Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 165 MDVKTAFLNGDLEEEVYMDQPEGFATTGKQSLVCKLKKSIYRLKQASCQWYLKFNNTITS 224
MDVK AFLNGDL EEVYM P G + + VC L++++Y LKQA W+ KF++TI
Sbjct: 1 MDVKNAFLNGDLSEEVYMQPPPGLSVESNK--VCHLRRALYGLKQAPRAWFAKFSSTIFR 58
Query: 225 YGF 227
G+
Sbjct: 59 LGY 61
>GSVIVT01031724001 assembled CDS
Length = 1135
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 408 LTYRRSTHLEVVGYSDSNYAGCVDSRKSTIGYLFLLAGGAVSWKSGKQFVIATSTMEAKF 467
L+++ S+ L+++ Y+D++ A C D R+ST GY G +SW + KQ V++ S++E+K+
Sbjct: 1044 LSFQPSSSLDLIAYTDADGASCPDDRRSTNGYCIFFRGNLISWSASKQKVVSRSSIESKY 1103
Query: 468 VACFEATVHALWL 480
AT+ W+
Sbjct: 1104 RGLANATIELTWI 1116
>GSVIVT01028343001 assembled CDS
Length = 2295
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 433 RKSTIGYLFLLAGGAVSWKSGKQFVIATSTMEAKFVACFEATVHALWLXNFVSGLGIIDS 492
R+ST GY + G +SWKS KQ V+A S+ EA++ A AT +WL + + L
Sbjct: 1467 RRSTSGYCVFIGGNLISWKSKKQDVVARSSAEAEYRAMALATCELIWLRHLLQELRF--G 1524
Query: 493 IARPLRIYCDNFGAVFFSXNDRYSKGAKQMDLKYLSVKEEVQKHKGSIEHIGIDMIIADP 552
+++ CDN A+ + N + + K +++ ++E++ + + + +AD
Sbjct: 1525 KDEQMKLICDNQAALHIASNPVFHERTKHIEVDCHFIREKIASGCVATSFVNSNDQLADI 1584
Query: 553 LTKGL-PPKI 561
TK L P+I
Sbjct: 1585 FTKSLRGPRI 1594
>GSVIVT01013341001 assembled CDS
Length = 503
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%)
Query: 408 LTYRRSTHLEVVGYSDSNYAGCVDSRKSTIGYLFLLAGGAVSWKSGKQFVIATSTMEAKF 467
L + + ++ ++D+++AG ++ R+ST GY + G ++W+S KQ V+A S+ E KF
Sbjct: 27 LHFGKHDQFKIEAFTDADWAGSIEDRRSTSGYCTFVFGNLITWRSKKQNVVARSSAEVKF 86
Query: 468 VACFEATVHALWL 480
+ LW+
Sbjct: 87 RSIAHGICEVLWI 99